Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78650 286 / 9e-91 POLD3 DNA-directed DNA polymerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013748 [exp] 884 / 0 AT1G78650 303 / 4e-97 DNA-directed DNA polymerases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G387300 [exp] 404 / 2e-136 AT1G78650 330 / 1e-107 DNA-directed DNA polymerases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF09507 [flax] [poplar] CDC27 DNA polymerase subunit Cdc27
Representative CDS sequence Show only first row Show all	>Lus10039192 pacid=23150566 polypeptide=Lus10039192 locus=Lus10039192.g ID=Lus10039192.BGIv1.0 annot-version=v1.0 ATGGAAACCGTAGGCATCCTCGAAGACGTGGAGACCCTGGTATCAGACAAGAATCAAGTGGTTTCTTATAAGTGGCTGAGTCGCAACTTTTTGGTGCCAT CAAATGATGCCAAGAGGTTGCTCCAAGATTTTGTTGACAAACAGGGAAGCAGTTTGGACGTTGTTTATACTGTGTCTGGTTGGTTGAATAAGAATCCTCC TAGTTACAAAGTTAGGCTTGTCAGTGGGCTCAAACTGGAAGAAGCAAAGCAAGATTTTGATGGTAGCTGCTCAGTTGAGGTCTATAGTGTTCAAGCTTGC ATTCCCAGCGATCCAGCTGCTCTTTGGAATATGGAATTCATACAAGCAGAAGAGCTCATCAAGCAACCTTCCACTGATAACAATTGCTTGAGAGATAATA GGTTGTGTGGGATTGTTAATTCCTTTGTCCAGCGCATTGTTGACGGAACTCCTGTTAGCAGTTCAGCTGCCCAAACAAGTAATATTGGAATTGGACGACC ATCTACAAGTTTATCAGCATGCGGAAACAGTATGGCCCCTCCAGGTGATGAAAACAAAGTTAAGCAGCTCTGTAAAATGGCTGGTCAGCAACCCTCCAAC ATGCTCGGAGAAATTAAAACAGAGAAGAATGGGAAAATAATTTCTGATAAGAGTACCAAGCCTTCTGCAGTTGCTGAAAAAGCTCCTTCCTTGCCAATTA AGGGACAAGGTGACACCAACTCATCGAAACATGGTGGCTCATTAGCCAAGTTATGGGGGAATGCACCTGTAAAACCAAAGTTAACTAGCACACCAGCAGC CGACAATGCAGAAACAGGAAGTTGTGCTAGTGAAACATTTGAAGACGTTGTGAATGATTACGAGGATGGGGATGTCAACTTTAAGCGAAGAGGCTCCAAT GGTCTTTCTGGTAGAAAAAGGAGGGTAGTTTTTTATTACTCTGATGATGAATGTGAAGATGCAGTCAATCTGAGTTCAGGGGATCTAGTGAATGGTCAAA GCAATAAACCTGTTGCTGGCACTGACAGAATAGACGACATAGTGATGCACGATGAAGGGAAATCGGATGTGGCAATGGGTATCCAGAACATGAATGCTGC TTCTTCTGCTCCCAGCAAATGCAGTGACACTAAGACTTCATTTGCAGAGACAAAGGGCAGCTGCTTCATGCAAAATGATGTCAAAGACAATGCAGCTCCT AAAACTGTTCCTAGCTCTTCGAAAAGGAACAAAGTGATGAAGACATGGATTGATGAGCGCGGCAGAGAAGTGACTGAAGTAGTATACGAGCAGGATGAGA CGGAGAAGAAGAGCGTTGAAGGTAAGAAGGCAGGAACCACCTCTAATGATACAACTACAAAACCAGCAAACAGAGAACCGGCACCTAAGAAGTCGGCCCC AGCTCCGACACATGCAGGAGGGAAAGCAGGTGGGAACAAGGCTGCAGGCAAGAAGGATCCAAAGCAAGGCAACATCATGTCCTTCTTCAAGAAAGTCTGA
AA sequence Show only first row Show all	>Lus10039192 pacid=23150566 polypeptide=Lus10039192 locus=Lus10039192.g ID=Lus10039192.BGIv1.0 annot-version=v1.0 METVGILEDVETLVSDKNQVVSYKWLSRNFLVPSNDAKRLLQDFVDKQGSSLDVVYTVSGWLNKNPPSYKVRLVSGLKLEEAKQDFDGSCSVEVYSVQAC IPSDPAALWNMEFIQAEELIKQPSTDNNCLRDNRLCGIVNSFVQRIVDGTPVSSSAAQTSNIGIGRPSTSLSACGNSMAPPGDENKVKQLCKMAGQQPSN MLGEIKTEKNGKIISDKSTKPSAVAEKAPSLPIKGQGDTNSSKHGGSLAKLWGNAPVKPKLTSTPAADNAETGSCASETFEDVVNDYEDGDVNFKRRGSN GLSGRKRRVVFYYSDDECEDAVNLSSGDLVNGQSNKPVAGTDRIDDIVMHDEGKSDVAMGIQNMNAASSAPSKCSDTKTSFAETKGSCFMQNDVKDNAAP KTVPSSSKRNKVMKTWIDERGREVTEVVYEQDETEKKSVEGKKAGTTSNDTTTKPANREPAPKKSAPAPTHAGGKAGGNKAAGKKDPKQGNIMSFFKKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10039192 [exp]	0	1
AT2G27470	CCAAT	NF-YB11	"nuclear factor Y, subunit B11...		Lus10004867 [exp]	1.0	0.9295
AT3G46940		DUT1	DUTP-PYROPHOSPHATASE-LIKE 1 (....		Lus10007155 [exp]	4.7	0.8947
AT3G53730			Histone superfamily protein (....		Lus10023331 [exp]	4.9	0.9247
AT3G48710			DEK domain-containing chromati...		Lus10016746 [exp]	5.2	0.9011
AT3G53730			Histone superfamily protein (....		Lus10040849 [exp]	6.0	0.9055
AT2G28740		HIS4	histone H4 (.1)		Lus10025964 [exp]	6.5	0.9241
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10014124 [exp]	7.5	0.8494
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012906 [exp]	9.0	0.8757
					Lus10038266 [exp]	9.2	0.8904
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10018753 [exp]	10.0	0.9239

Compare expression of checked genes

Lus10039192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.