Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14880 135 / 7e-39 unknown protein AT4G18690 121 / 5e-33 unknown protein AT5G45830 109 / 2e-28 ATDOG1, GSQ5, DOG1 GLUCOSE SENSING QTL 5, delay of germination 1 (.1) AT4G18680 103 / 8e-27 unknown protein AT4G18650 98 / 2e-24 transcription factor-related (.1) AT1G58330 84 / 4e-19 ZW2 transcription factor-related (.1) AT3G12250 70 / 9e-14 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06950 69 / 2e-13 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT1G09950 67 / 3e-13 RAS1 RESPONSE TO ABA AND SALT 1 (.1) AT4G18660 63 / 2e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042453 [exp] 286 / 2e-97 AT3G14880 145 / 3e-42 unknown protein Lus10039196 [exp] 242 / 4e-80 AT3G14880 135 / 1e-38 unknown protein Lus10013746 [exp] 241 / 1e-79 AT3G14880 141 / 5e-41 unknown protein Lus10013711 [exp] 150 / 2e-44 AT3G14880 251 / 2e-84 unknown protein Lus10015276 [exp] 122 / 4e-33 AT4G18690 204 / 6e-65 unknown protein Lus10026217 [exp] 108 / 2e-29 AT3G14880 83 / 7e-20 unknown protein Lus10013747 [exp] 103 / 3e-28 AT4G18660 50 / 6e-09 unknown protein Lus10029229 [exp] 102 / 8e-26 AT4G18650 207 / 2e-67 transcription factor-related (.1) Lus10007282 [exp] 98 / 2e-24 AT4G18650 208 / 2e-67 transcription factor-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098800 [exp] 263 / 4e-88 AT3G14880 159 / 6e-48 unknown protein Potri.001G390100 [exp] 139 / 2e-40 AT3G14880 255 / 3e-86 unknown protein Potri.004G058200 [exp] 117 / 1e-31 AT4G18650 226 / 1e-74 transcription factor-related (.1) Potri.008G118300 [exp] 66 / 5e-12 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.006G058800 [exp] 61 / 2e-10 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.005G170500 [exp] 60 / 2e-10 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1) Potri.002G090700 [exp] 60 / 2e-10 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.009G164300 [exp] 60 / 5e-10 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.003G194600 [exp] 59 / 8e-10 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.005G082000 [exp] 59 / 9e-10 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039193 pacid=23150370 polypeptide=Lus10039193 locus=Lus10039193.g ID=Lus10039193.BGIv1.0 annot-version=v1.0 ATGGTTGCTGGAGCAGGAGCGGAACCTCAGCGACCTAATCACGCCGCCAACAACCACCGCCAATGGAAGCAGGAGTCGCTCCGCCGCCTCAGGGATCGGG TGATGGAGCACTACGGGCAGTACTACAAGGTGAAGTCGATGTGGGCCCACCACGACGTGAAGTCGATGCTCTCCCCGTCGTGGAGGAGCTCTCTGGAGGA CGCTTTCCTCTGGATCGGTGGGTGGAGACCTTCCATGGCTTTCCACCTCCTCTACTCCAAATCGGGGCTCCAACTGGAGACCAAGCTCCACGACCTGATC GGGGGGCTCACCACCGCCGACCTTTCCGACATCTCCGCCGCTCAATTGCGACGGATCGACGAGCTCCAGCGGGAGACGATCGGGGATGAGAGGGTGATAG GTGAGAAGATGGCTAAGGTGCAGGAATCCGTTGCGGACTCCAACATGGTGGACCTGTCTCATACGGCGAGCGAGATGATTCGGAGGTATCGCGACGACAA CGGCGATCGCGTGGGCCCGGGACCGGAATTGGACTCACAACCGGGCCCAAGTGCGAACGAGCGGATGAATGATCGGGTGGATACTGCATTGGCGAGTAAG GAGAAGAAACTCGAGGAGGTTCTGCGGGTGGCTGATGATCTACGGCTGGCGACGCTCCGGGGTATTGTTGATGTGTTGACTCCGATCCAGGCCGTTCATT TCTTGATTGCTGTTGCTGAGCTTCATCTTCGGCTTCATGATTGGGGGAAGCGGAAGGATGCTGCCGCACCATCGTAG
AA sequence Show only first row Show all	>Lus10039193 pacid=23150370 polypeptide=Lus10039193 locus=Lus10039193.g ID=Lus10039193.BGIv1.0 annot-version=v1.0 MVAGAGAEPQRPNHAANNHRQWKQESLRRLRDRVMEHYGQYYKVKSMWAHHDVKSMLSPSWRSSLEDAFLWIGGWRPSMAFHLLYSKSGLQLETKLHDLI GGLTTADLSDISAAQLRRIDELQRETIGDERVIGEKMAKVQESVADSNMVDLSHTASEMIRRYRDDNGDRVGPGPELDSQPGPSANERMNDRVDTALASK EKKLEEVLRVADDLRLATLRGIVDVLTPIQAVHFLIAVAELHLRLHDWGKRKDAAAPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14880			unknown protein		Lus10039193 [exp]	0	1
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	5.6	0.8719
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10022720 [exp]	7.2	0.8374
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042433 [exp]	9.2	0.8292
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10018662 [exp]	9.5	0.7947
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10003681 [exp]	9.5	0.8024
					Lus10015620 [exp]	11.2	0.8209
AT5G49120			Protein of unknown function (D...		Lus10006499 [exp]	14.7	0.8002
AT2G46640			unknown protein		Lus10005993 [exp]	15.3	0.8205
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10001594 [exp]	15.3	0.7972
AT3G55080			SET domain-containing protein ...		Lus10023469 [exp]	16.4	0.7659

Compare expression of checked genes

Lus10039193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.