Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31390 152 / 5e-45 STH pfkB-like carbohydrate kinase family protein (.1) AT1G06030 151 / 6e-45 pfkB-like carbohydrate kinase family protein (.1) AT1G06020 151 / 1e-44 pfkB-like carbohydrate kinase family protein (.1) AT3G59480 150 / 2e-44 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 130 / 7e-37 pfkB-like carbohydrate kinase family protein (.1) AT1G66430 125 / 3e-34 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 113 / 5e-30 pfkB-like carbohydrate kinase family protein (.1) AT3G54090 51 / 2e-07 FLN1 fructokinase-like 1 (.1) AT1G69200 42 / 0.0001 FLN2 fructokinase-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009526 [exp] 173 / 4e-53 AT2G31390 553 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10013611 [exp] 161 / 9e-49 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10026865 [exp] 161 / 1e-48 AT3G59480 560 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10040562 [exp] 129 / 2e-36 AT4G10260 539 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10020346 [exp] 127 / 2e-36 AT3G59480 441 / 8e-158 pfkB-like carbohydrate kinase family protein (.1) Lus10009126 [exp] 129 / 9e-36 AT1G66430 582 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028517 [exp] 129 / 1e-35 AT1G66430 575 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10028089 [exp] 122 / 3e-34 AT4G10260 452 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Lus10027401 [exp] 122 / 3e-33 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G129700 [exp] 158 / 2e-47 AT3G59480 559 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G029000 [exp] 155 / 5e-46 AT3G59480 568 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.017G126300 [exp] 129 / 5e-36 AT1G66430 519 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 129 / 6e-36 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 126 / 3e-35 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.012G132700 [exp] 121 / 5e-33 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 119 / 3e-32 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.014G074125 [exp] 71 / 7e-16 AT5G51830 80 / 7e-19 pfkB-like carbohydrate kinase family protein (.1) Potri.008G097300 [exp] 53 / 4e-08 AT1G69200 598 / 0.0 fructokinase-like 2 (.1) Potri.016G109600 [exp] 48 / 1e-06 AT3G54090 630 / 0.0 fructokinase-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF00294 [flax] [poplar] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Lus10039195 pacid=23150609 polypeptide=Lus10039195 locus=Lus10039195.g ID=Lus10039195.BGIv1.0 annot-version=v1.0 ATGATGTGGAAGGACATGGATGCGCGCCACCCTCCTATCCATGTCGAGGCTGCCTCTAGACTGGTTCTCCACGGTGGCGACAGCAGGGAGATCGAGCATG CTTTGGCGGGCCCACTCGGATTTTGCCCTGTAGTACACCTTATAATGCCCCCATTACCCGCCTCGTCAGCCATCGAAGTTCGCTCCTGCGGCCGTCGTTG TCGTCATCTTTGGCCGCCGAAATCAGATCACGACGATATAGTGAATGCGATCGCCGTCTCCAGACTCGGCGGGAAATCCGCCTTCCTCAGAAAGCTCGGC GACGACGAGTTCGGCCACATGCTGGCCGGGATCTTGAAGGAGAACGGCGTGATCGGCGACGGCATCAACTTCGACAAGGGAGCCAGGACCGCACTCGCCT TCGTCACTCTCAAGGCCGACGGCGACCGTGAGTTCATGTTCTTCCGTAACCCCAGCGCCGACATGCTCCTCCAGCCCGAGGAGCTCAATCTCGAGCTCAT TAGATCTTTTCCGTTCAAAAATTTCAGTCTGGTGACGTGGATTTCAGGCGCGCGGGGGATGGGGTTAGCCGAAGTTGCTCCGGTTATAGCGTAA
AA sequence Show only first row Show all	>Lus10039195 pacid=23150609 polypeptide=Lus10039195 locus=Lus10039195.g ID=Lus10039195.BGIv1.0 annot-version=v1.0 MMWKDMDARHPPIHVEAASRLVLHGGDSREIEHALAGPLGFCPVVHLIMPPLPASSAIEVRSCGRRCRHLWPPKSDHDDIVNAIAVSRLGGKSAFLRKLG DDEFGHMLAGILKENGVIGDGINFDKGARTALAFVTLKADGDREFMFFRNPSADMLLQPEELNLELIRSFPFKNFSLVTWISGARGMGLAEVAPVIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10039195 [exp]	0	1
AT3G54490		RPB5E	"RNA polymerase II fifth large...		Lus10039554 [exp]	1.0	0.8767
					Lus10019796 [exp]	2.2	0.8585
AT5G05370			Cytochrome b-c1 complex, subun...		Lus10035013 [exp]	5.5	0.8197
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10036314 [exp]	6.5	0.8111
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10036596 [exp]	7.3	0.8485
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	7.9	0.8675
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030596 [exp]	11.0	0.8649
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10020604 [exp]	11.5	0.8665
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	15.7	0.8473
					Lus10022721 [exp]	17.5	0.8331

Compare expression of checked genes

Lus10039195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.