Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14880 115 / 7e-31 unknown protein AT5G45830 107 / 2e-27 ATDOG1, GSQ5, DOG1 GLUCOSE SENSING QTL 5, delay of germination 1 (.1) AT4G18690 106 / 3e-27 unknown protein AT4G18680 96 / 1e-23 unknown protein AT4G18650 83 / 9e-19 transcription factor-related (.1) AT4G18660 71 / 3e-15 unknown protein AT5G06950 71 / 4e-14 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT5G06960 71 / 6e-14 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT3G12250 67 / 8e-13 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT1G58330 62 / 2e-11 ZW2 transcription factor-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013746 [exp] 426 / 1e-152 AT3G14880 141 / 5e-41 unknown protein Lus10042453 [exp] 251 / 2e-83 AT3G14880 145 / 3e-42 unknown protein Lus10039193 [exp] 229 / 5e-75 AT3G14880 135 / 5e-39 unknown protein Lus10039194 [exp] 127 / 1e-37 ND / Lus10013711 [exp] 131 / 4e-37 AT3G14880 251 / 2e-84 unknown protein Lus10015276 [exp] 106 / 4e-27 AT4G18690 204 / 6e-65 unknown protein Lus10026217 [exp] 100 / 3e-26 AT3G14880 83 / 7e-20 unknown protein Lus10007282 [exp] 91 / 1e-21 AT4G18650 208 / 2e-67 transcription factor-related (.1) Lus10028231 [exp] 88 / 1e-20 AT1G58330 154 / 8e-47 transcription factor-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098800 [exp] 220 / 2e-71 AT3G14880 159 / 6e-48 unknown protein Potri.001G390100 [exp] 119 / 2e-32 AT3G14880 255 / 3e-86 unknown protein Potri.004G058200 [exp] 97 / 5e-24 AT4G18650 226 / 1e-74 transcription factor-related (.1) Potri.001G029800 [exp] 63 / 3e-11 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.003G194600 [exp] 61 / 2e-10 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.008G118300 [exp] 56 / 7e-09 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.016G036500 [exp] 56 / 7e-09 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.005G170500 [exp] 54 / 2e-08 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1) Potri.002G090700 [exp] 53 / 7e-08 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.006G039000 [exp] 52 / 2e-07 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039196 pacid=23150526 polypeptide=Lus10039196 locus=Lus10039196.g ID=Lus10039196.BGIv1.0 annot-version=v1.0 ATGGTGGAGAACAACTCGAAGTCGTTTAAGGACTACTATGACAAATTGTTAGTGGACCAAGAAAGAGACCTACGTGATCTGATTTCGGCAACGGAAGACG ACAACAACAACAACGACAACGAGGATCGCAGGAGCGAACTCCGAGCGTTGACGAGGCAGGTAATGGGGAGCTACGAGGAGTACTACAGGGTAAAATCCGA GTGGGCACACCGAAACGTACTCTCCCTGCTGTCGCCGCCGTGGAAAACCAGTCTAGAGGCAGCCTTCACATGGATAGGAGGGTGGCGCGCATCCATGTCC TTCCACGTAATCTACTCCAAGTCGGGCCTCCAGTTAGAGTCCTGGATACAAAACATGATCCAGGCGTCATCATTGGGCTCCGACTTGGCGGACCTCTCGT CGGAGCAGTTCAAAATGATGGACGAACTCCAGAGGTTGACCATCAGGGAAGAGAACGAAATTTCGGAGAAGATGGCGAAGGTGCAGGAATCCTCCGCGGA CGCTTCCATGGTGGAGCTCTCCCACGCTATGAGCCAGATGCAGGTGCTGACGGCAGCGGACCAGGGGAGGCCGATTGAGGATCGGGTGGAGAGGGCGTTG AGTTCCAAAGAGAGGAAGTTAGCGGAGATGTTGCGGATGGCGGATGATCTACGGTTGAGAACGTGCAGGGCGATAGTTGACGAAGTTTTGACTCCCATCC AGGCCGTTCATTTCTTGATTGCTATGGCTGAGTTGCACCTTCGGCTTCACGAATGGGGGAAGAAGAGAGACGGCCAAGACTGA
AA sequence Show only first row Show all	>Lus10039196 pacid=23150526 polypeptide=Lus10039196 locus=Lus10039196.g ID=Lus10039196.BGIv1.0 annot-version=v1.0 MVENNSKSFKDYYDKLLVDQERDLRDLISATEDDNNNNDNEDRRSELRALTRQVMGSYEEYYRVKSEWAHRNVLSLLSPPWKTSLEAAFTWIGGWRASMS FHVIYSKSGLQLESWIQNMIQASSLGSDLADLSSEQFKMMDELQRLTIREENEISEKMAKVQESSADASMVELSHAMSQMQVLTAADQGRPIEDRVERAL SSKERKLAEMLRMADDLRLRTCRAIVDEVLTPIQAVHFLIAMAELHLRLHEWGKKRDGQD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14880			unknown protein		Lus10039196 [exp]	0	1
AT1G04670			unknown protein		Lus10004041 [exp]	3.6	0.9925
					Lus10007508 [exp]	5.1	0.9925
AT3G27810	MYB	AtMYB3, ATMYB21	ARABIDOPSIS THALIANA MYB DOMA...		Lus10022259 [exp]	5.7	0.9285
AT2G32885			Rapid alkalinization factor (R...		Lus10000923 [exp]	5.8	0.9167
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	6.2	0.9925
					Lus10006918 [exp]	7.2	0.9925
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009516 [exp]	8.1	0.9925
					Lus10027066 [exp]	8.8	0.9925
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10000534 [exp]	9.2	0.8995
					Lus10040397 [exp]	9.5	0.9925

Compare expression of checked genes

Lus10039196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.