Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23030 73 / 8e-13 PUB11 ARM repeat superfamily protein (.1) AT1G68940 72 / 2e-12 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT1G76390 72 / 2e-12 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G71020 71 / 3e-12 ARM repeat superfamily protein (.1.2) AT1G49780 69 / 9e-12 PUB26 plant U-box 26 (.1) AT5G42340 69 / 1e-11 PUB15 Plant U-Box 15 (.1) AT1G29340 69 / 1e-11 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT5G65920 67 / 3e-11 ARM repeat superfamily protein (.1) AT1G20780 67 / 6e-11 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT5G01830 67 / 7e-11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013745 [exp] 1925 / 0 AT1G23030 78 / 2e-14 ARM repeat superfamily protein (.1) Lus10038340 [exp] 189 / 4e-49 AT3G06880 66 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10036201 [exp] 183 / 5e-47 AT3G06880 61 / 5e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013551 [exp] 136 / 6e-32 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017257 [exp] 118 / 2e-26 AT3G06880 186 / 3e-47 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10034937 [exp] 96 / 2e-19 AT3G06880 248 / 6e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023666 [exp] 94 / 5e-19 AT3G06880 246 / 5e-68 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023667 [exp] 91 / 1e-18 AT2G28830 84 / 9e-17 PLANT U-BOX 12 (.1) Lus10017444 [exp] 83 / 9e-16 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G214100 [exp] 975 / 0 AT5G42340 84 / 4e-16 Plant U-Box 15 (.1) Potri.001G012300 [exp] 584 / 0 AT5G42340 72 / 7e-13 Plant U-Box 15 (.1) Potri.015G117300 [exp] 188 / 1e-48 AT3G06880 53 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G118600 [exp] 185 / 9e-48 AT3G06880 54 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G240100 [exp] 120 / 4e-27 AT3G06880 237 / 3e-63 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G021600 [exp] 108 / 1e-23 AT3G06880 231 / 3e-61 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G083600 [exp] 104 / 3e-22 AT3G06880 219 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G238500 [exp] 77 / 6e-14 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 76 / 7e-14 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G071600 [exp] 76 / 9e-14 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10039197 pacid=23150703 polypeptide=Lus10039197 locus=Lus10039197.g ID=Lus10039197.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCCTTGGAGAAGCTGCTTCAAGAGGATGGTTTCAAAGGAAGACGATCAGGGATGCAAAACAGAGCCTCATTCAAAGCAGAAACTGCAAGTA GTACACGGCAAGTAGCATCAGGATCTAGAATCAGAACAGAAAGGGCAAGCTCTGATGCATATCGTTACGGCTCGCAGGGTGAATCTTCAAGAAGAAATGC TGGCACTGGCAGAAAGCCTCAAGAATATGTGGCAAGTAGACTTAAACCCGAGGGAAGAAAAGATGAAGCTAAGTGGGACAGGCCTCACACACGTTCTAGT ATGAAACAGCACGATAAAACACTAAAGACTCGCTCATCTGAAGATAGTGATCGAAGGGAGATAGGTGATGAAGCAGATGGCATTAGGGACATATATTCTG ATAAAGAATACAGATTTGACAGAAAGGATGGGTTCTCTTCAGGGCAGAGTGAAATGGAGGAGTATCAAGAGAGGAGAAAGAAGGATTCGAGATTAGGTCC TCTTGGCGGGAACACCGGAAAAGATTTAATCAAATATGCAGCTGTTAGCGGTGGTAATAGGAATAAGTCGAAACTTCTTGAAAACCATCATAGAAATTCT TCCCGAGGTCAAAAGGACAGCAATAACTTTGAAGATGATGGAAGGAGGAGGCCTGAAAACCCTCAAGTCCCTAGCATTGCATTGGATGAAGTTGCTGTCA AAGCCATGATCTCCATCTTAAATGGTTACACTAAACGTTTTTTCAGAGATGAGGAATTCCGGAACATGGTGCGTTACAATAGTTTCTCTTCATTTAACTT CAATGAGATAGAAGAAGTTGAAAGCATTGAGAAAAAAGTCATTACCAGTCTTGAAGATGCTATTTATACAGTGGAAGAAGCAGCTAAGGAGGACGTGAGT GCAAAAGATCTGAAAAAAGCTGGTTTGCAACTCAGTGTAATAACGGGGTTGAACTCGAACGAGTTGAAAGATGGCTATACATTTGGAGTTCCAAACTCGT GGTTGTCAGCTTGTGCACAGTTCTACCTCAGTGCCGTGTACAAGCTACAGAAGAAGGACAGAGTTTCAGCCAAACATCTTCTGCAAGTATTCTGCGACTC GCCATTTTGGGCACGATCGGTTTTGTTGCCTGACCTTTGGGAATATTTGTTGTTTCCACATCTTTCACATTTAAAATTGTGGTACAACCAGGAGGCAGAG TCTCTACCAGACACACCAAGCAAGATAAGGAAAATTAAGCTTCTTGACAAAGTTTACAATGAAACGCTGGATTCCGGTACTTTCCAGTTTGCAACTTACT ACAAGGATTGGCTGACCGAGGGCCTTGAAGCTCCTGATCTTCCTTCCATTCATATACCTTCATTATCAAGTCGGAGTCCATCACAAGGGAGTTCTAACGA TCATCCTTCAGGGCTAAGCAGTCCATCGGGTCCTTATTCACCTAGGCCCGCGGTCAGCAAGACCTTATACGATGCTGTATATGGCCGTTCAAGTAAACTC GGAATCCGAGGGGATGGAGAAAACAAGGATGCAGGCAACACTCGTATTAGTGCAAAGAGCTCAGATGATTCTGGTGTTCAGGTTAAAGAAACACTAACAT TTTCTTCTGAAACGGGCAATCGTTTGGATGCAAGGGTGGTAAATGGAAAAGATAATGCATCCCTTCATGAGCGTGACCTATCATCAACATCCGAGGAAGA ATGGAAACTGGTTGAAATAAGAGATGAACCAGAAACACATTCCAACGGGGGGAAATTTGGTTGTCAAGAGTGGCAAGCTGCTATCCAAGACACTCCTATA TTGGCTACGTCTCCAGAGACAAAATCAAATGTGCTAATGCTCAAGGGCGTAACAAAATCTGTTATTGGACGGCCAAGTTTTAATGGGTCCAGTGATCTCA CTGTTCATTTCCACCCACAGAACATCAAGGTATTGTCACCGATGGCTGTTTATGGAGAGTTTCCAGGGGATTCTGAGTACTTCGAGGAAGGGTCCTTCTA CGCAAGCATCCCTCAGGACTTCGTGTGTCCGTTAACTGGAGTTTTATTTGAAGACCCAGTGACCTTGGAAACTGGGCAAACATTCGAGAGAGAAGCTTTC GCAGAATGGTTTAATCAGGGAAATAGAATGTGTCCAGTAACAGGGAAGGCTTTAGAATGTGCGAACCTTCCACTGACAAACTTCATTTTGAAACGGGTCA TTCATAACTGGAAGTTGGAACATTGCGGTCAATTGTTGGCTTTAGCGTCACAAATTATCAGAACTTCACGTGACTATGAGCCAAGACAAAGAGATGAAAC AGCGACCTTTATTCTAGAGAAGCTTCTTACAACTTTTAGTGTAGATGAAAGAATCAAGAATGCCATACACCTTGTGTGCCTTGAAAGCTTGGAATTTCTT AGTAGAAGATTTGCACAGGGAAATTTGGAAGAGAAAACCCGTGTAGCATTGCTTCTCTCCTGTTGTATTGAAGCTGACGGGGACTGCAGAAGTCTGATAG CCAAAAATGTAGATAAGCAGGGCCTCCTAAAACTACTTCACAGCAAGGAGCCTAACTCCAGACAGAATGCAGTTCTCCTTATGACTGAGCTAGTTTGTCT GAGCAGAAGGACAGATGTTAAATTGTTTTTTCGTGACGTGGAGAATGAGAAGATAACCAGTGTGATGCATGTGCTTCTTCTATACCTTCAGAGTTCCCCA CCTGAACAAAAGCCCGCAGTTTCTGTACTGCTTTTACACTTAGACCTTCTGGCTGAACCTCAAAAGTACAGCATATACAGGGAGGAAGCACTTGATGCCA TTGCGACGGCCCTAGAATGCTGCGGCAACGATGACAAGGTCCGGGAAACTACTTGCAAAGCGTTGCTCCTCTTAGGTGGGTGCTTTTCTGCCACAGGGAA GAGCTTGATAGAAAGTTTGATTCTAAAGCAAGCGGGGTCTGCTAATACATCTGAACCGAATTCTCAAGAAGAAATATATCTTGATGATTCAGTTTCTCAG GAAGAAGAAGATGAGGCATCTGTAGAGTGGTTGAGGAACTTGTCAAGATTGTTGCTCAGCGGCAACAGAGATAAGTCGTTCTTGGAGTTGATTTCGCAAT GTTTGAGCTCCGGTAAACCGGATTTGGTGAAAGCATGCCTAACCACAATTGCGTGGTTAAGTTGTGGACTTTCTTCTCAATCCGATGCGGATTTCCAGCT TCCTGCTGGATTCTCTTCCCTCATCTCTGGACTCAAAGAATGCTTAGAGAATGGGAAGCAGATTGAGCACAAGGTCCTGGCTTCCATGTCTCTGCTAAAT TTCAGTAGAATCCCAGAATGCAGGGTGATGTTAATTACAGTAGCAAGAGATATTGCAGATCCACTTCAGAGCCTTTTTAGTGAAACATGGACAGCAAAAC AGCTCCATTCCATCATCACCTCTGATTCATAA
AA sequence Show only first row Show all	>Lus10039197 pacid=23150703 polypeptide=Lus10039197 locus=Lus10039197.g ID=Lus10039197.BGIv1.0 annot-version=v1.0 MASSLEKLLQEDGFKGRRSGMQNRASFKAETASSTRQVASGSRIRTERASSDAYRYGSQGESSRRNAGTGRKPQEYVASRLKPEGRKDEAKWDRPHTRSS MKQHDKTLKTRSSEDSDRREIGDEADGIRDIYSDKEYRFDRKDGFSSGQSEMEEYQERRKKDSRLGPLGGNTGKDLIKYAAVSGGNRNKSKLLENHHRNS SRGQKDSNNFEDDGRRRPENPQVPSIALDEVAVKAMISILNGYTKRFFRDEEFRNMVRYNSFSSFNFNEIEEVESIEKKVITSLEDAIYTVEEAAKEDVS AKDLKKAGLQLSVITGLNSNELKDGYTFGVPNSWLSACAQFYLSAVYKLQKKDRVSAKHLLQVFCDSPFWARSVLLPDLWEYLLFPHLSHLKLWYNQEAE SLPDTPSKIRKIKLLDKVYNETLDSGTFQFATYYKDWLTEGLEAPDLPSIHIPSLSSRSPSQGSSNDHPSGLSSPSGPYSPRPAVSKTLYDAVYGRSSKL GIRGDGENKDAGNTRISAKSSDDSGVQVKETLTFSSETGNRLDARVVNGKDNASLHERDLSSTSEEEWKLVEIRDEPETHSNGGKFGCQEWQAAIQDTPI LATSPETKSNVLMLKGVTKSVIGRPSFNGSSDLTVHFHPQNIKVLSPMAVYGEFPGDSEYFEEGSFYASIPQDFVCPLTGVLFEDPVTLETGQTFEREAF AEWFNQGNRMCPVTGKALECANLPLTNFILKRVIHNWKLEHCGQLLALASQIIRTSRDYEPRQRDETATFILEKLLTTFSVDERIKNAIHLVCLESLEFL SRRFAQGNLEEKTRVALLLSCCIEADGDCRSLIAKNVDKQGLLKLLHSKEPNSRQNAVLLMTELVCLSRRTDVKLFFRDVENEKITSVMHVLLLYLQSSP PEQKPAVSVLLLHLDLLAEPQKYSIYREEALDAIATALECCGNDDKVRETTCKALLLLGGCFSATGKSLIESLILKQAGSANTSEPNSQEEIYLDDSVSQ EEEDEASVEWLRNLSRLLLSGNRDKSFLELISQCLSSGKPDLVKACLTTIAWLSCGLSSQSDADFQLPAGFSSLISGLKECLENGKQIEHKVLASMSLLN FSRIPECRVMLITVARDIADPLQSLFSETWTAKQLHSIITSDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23030		PUB11	ARM repeat superfamily protein...		Lus10039197 [exp]	0	1
AT5G22050			Protein kinase superfamily pro...		Lus10004110 [exp]	6.5	0.9275
AT4G37410		CYP81F4	"cytochrome P450, family 81, s...		Lus10024083 [exp]	7.3	0.9337
AT2G04220			Plant protein of unknown funct...		Lus10027127 [exp]	7.5	0.9046
AT4G19420			Pectinacetylesterase family pr...		Lus10035682 [exp]	9.6	0.9302
AT5G17680			disease resistance protein (TI...		Lus10041078 [exp]	11.6	0.9085
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10010290 [exp]	13.9	0.9168
AT4G13400			2-oxoglutarate (2OG) and Fe(II...		Lus10033085 [exp]	15.6	0.9316
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10035921 [exp]	15.9	0.8898
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10037085 [exp]	17.1	0.9305
AT3G04070	NAC	ANAC047	NAC domain containing protein ...		Lus10003269 [exp]	18.0	0.9288

Compare expression of checked genes

Lus10039197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.