Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15860 338 / 6e-119 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) AT3G12760 100 / 2e-25 unknown protein AT3G28970 46 / 7e-06 AAR3 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013742 [exp] 412 / 7e-147 AT1G15860 367 / 5e-129 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10019598 [exp] 268 / 3e-91 AT1G15860 285 / 4e-98 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10040019 [exp] 263 / 3e-89 AT1G15860 278 / 2e-95 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10026216 [exp] 236 / 9e-80 AT1G15860 252 / 3e-86 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10000875 [exp] 97 / 3e-24 AT3G12760 383 / 3e-136 unknown protein Lus10009599 [exp] 97 / 3e-24 AT3G12760 380 / 3e-135 unknown protein Lus10005235 [exp] 46 / 1e-05 AT3G28970 258 / 1e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Lus10030685 [exp] 45 / 2e-05 AT3G28970 255 / 4e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G047900 [exp] 345 / 1e-121 AT1G15860 328 / 3e-115 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.003G180300 [exp] 343 / 7e-121 AT1G15860 348 / 6e-123 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.018G112200 [exp] 288 / 3e-99 AT1G15860 267 / 4e-91 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.008G083800 [exp] 97 / 3e-24 AT3G12760 415 / 1e-148 unknown protein Potri.004G122100 [exp] 50 / 3e-07 AT3G28970 296 / 3e-100 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Potri.017G084300 [exp] 47 / 4e-06 AT3G28970 269 / 1e-90 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF03556 [flax] [poplar] Cullin_binding Cullin binding
Representative CDS sequence Show only first row Show all	>Lus10039198 pacid=23150637 polypeptide=Lus10039198 locus=Lus10039198.g ID=Lus10039198.BGIv1.0 annot-version=v1.0 ATGAGTCGTTCGTCGTCGAGGAAGACGAGTCAATCCGATTCCACAGCTCCCGTCGCTTCTTCCGCCACCGGCCTTTTCCGTTCCGCTACAAGTAAAGCAT CTTCCAAAGAGACTGATCGGATTGATAACTTGTTTAACTCGTATGCAAACAAGTCTTCTGGTCTTATTGACCCGGAAGGAATTGAAGCTCTGTGTTCAGA TTTAGAGGTAGATCATACTGATGCCAGGATCTTAATGCTAGCATGGAAAATGAAAGCTGAAAAACAAGGATACTTCACACTGGATGAGTGGCGAAGAGGC CTTAAAGCACTGCGGGCTGATAATGTAAACAAATTGAAGAAGGCTCTCCCAGAGCTTGAGAAAGAGGTTAAAAGGCCATCAAATTTCGTGGACTTCTATT CTTTTGGATTTCAGTATTGCCTAACGGAGGAGAAACAGAAAAGCATAGACATCGAAAGCATCTGCCTTTTACTTGATCTTGTATTGGGATCCCAGTTTCG TCCTCAGGTTGATTACTTCATCGAGTATATGAAGATTCAGAACGATTATAAGGTCATAAACATGGACCAGTGGTTGGGGTTTTACCGTTTCTGCACCGAG ATAAGTTTCCCTGATCTTAGCAGCTATGATCCAGAACTCGCCTGGCCTTTAATTCTGGACAATTTTGTCGAATGGATTCGAGCAAAACAGACCTGA
AA sequence Show only first row Show all	>Lus10039198 pacid=23150637 polypeptide=Lus10039198 locus=Lus10039198.g ID=Lus10039198.BGIv1.0 annot-version=v1.0 MSRSSSRKTSQSDSTAPVASSATGLFRSATSKASSKETDRIDNLFNSYANKSSGLIDPEGIEALCSDLEVDHTDARILMLAWKMKAEKQGYFTLDEWRRG LKALRADNVNKLKKALPELEKEVKRPSNFVDFYSFGFQYCLTEEKQKSIDIESICLLLDLVLGSQFRPQVDYFIEYMKIQNDYKVINMDQWLGFYRFCTE ISFPDLSSYDPELAWPLILDNFVEWIRAKQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15860			Domain of unknown function (DU...		Lus10039198 [exp]	0	1
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	3.2	0.9364
AT5G32440			Ubiquitin system component Cue...		Lus10027700 [exp]	3.5	0.9020
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	6.6	0.9347
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	6.9	0.9132
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10014763 [exp]	7.5	0.9319
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10038738 [exp]	10.4	0.9033
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10042055 [exp]	10.5	0.9020
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10014942 [exp]	10.8	0.8820
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10040912 [exp]	13.6	0.8769
AT5G11680			unknown protein		Lus10020200 [exp]	13.6	0.9228

Compare expression of checked genes

Lus10039198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.