Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50480 1040 / 0 THFS 10-formyltetrahydrofolate synthetase (.1) AT2G12280 145 / 1e-41 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G12200 97 / 3e-24 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013741 [exp] 1147 / 0 AT1G50480 1151 / 0.0 10-formyltetrahydrofolate synthetase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G215100 [exp] 1070 / 0 AT1G50480 1087 / 0.0 10-formyltetrahydrofolate synthetase (.1) Potri.001G010800 [exp] 1067 / 0 AT1G50480 1123 / 0.0 10-formyltetrahydrofolate synthetase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01268 [flax] [poplar] FTHFS Formate--tetrahydrofolate ligase
Representative CDS sequence Show only first row Show all	>Lus10039200 pacid=23150691 polypeptide=Lus10039200 locus=Lus10039200.g ID=Lus10039200.BGIv1.0 annot-version=v1.0 ATGACTTCTTCTTCTTCCTCCAAAACACTGAGAAAGCTGGGGGTACTTTCTCCAGTACCGGCTGACATCGATATCGCCAACTCCGTCGAGCCTTTCCACA TATCCGAGATTGCCAGTGCCCTCAATCTCCGGCCTAGCGATTACGATCTTTACGGAAAATACAAAGCCAAGGTGTTGCTGTCAGTTGTGGATCAGCTAAA AGGATCAAGTGATGGGTACTACGTGGTTGTTGGTGGAATCACTCCTACGCCACTTGGAGAGGGCAAATCCACTACTACAGTGGGACTCTGTCAAGCTTTG GGTGCATTCCTTGACAAAAAGGTTGTTACTTGTGTCCGTCAACCATCACAAGGACCAACGTTTGGAATTAAAGGAGGTGCTGCCGGTGGTGGTTATAGTC AGATAATCCCAATGGACGAGTTCAATCTGCACATGACTGGAGATATTCATGCTATAACAGCTGCAAACAATCTGCTTGCAGCTGCAATTGATACCAGGAT ATTTCATGAATCTACTCAATCCGATAAGGCACTTTTGAATCGTCTATGTCCACCAAACAGGGAAGGAAAGCGAAAGTTTACCGACATAATGTTCAGGCGT CTGAATAAGGTTGGCATTACAAAGACTAGTCCCGAGGAACTGACTCCCGAGGAGGTGAAGAAATTCGCAAGACTTGATCTTGATCCGGAATCAGTTACTT GGAGGAGAGTGATGGATGTTAACGATCGGTTCTTGAGAAAGATCAGTATTGGCCAAGGTCCGGACGAGAAAGGGATGGTGAGAGAAACAGCTTTTGATAT CTCTGTGGCCAGTGAGATAATGGCCGTGCTGGCCCTCACAACATCCCTAGCTGATATGAGAGAGAGGCTTGGGAAAATGGTGGTTGGAAACAGCAGAGCT GGTGACCCTGTAACTGCTGATGATCTCGGTGTTGGAGGAGCATTAACAGTGCTAATGAAGGATGCCATTAACCCCACTCTGATGCAGACCCTCGAAGGGA CTCCTGTTCTTGTTCATGCGGGTCCTTTTGCAAATATAGCTCATGGAAATTCTTCGGTGGTGGCTGACAAGATTGCTTTGAAACTTGTAGGACCAGGAGG GTTTGTGGTCACCGAAGCAGGGTTTGGTGCTGATATAGGAACGGAGAAGTTCATGAACATAAAGTGCCGTTATAGTGGCTTAAAACCGCAATGTGCTGTA ATTGTCGCGACGATCAGGGCCCTTAAAATGCACGGTGGTGGACCTCCGGTTGTTGCCGGAAAGCCCCTTAACCATGCTTACACTACCGAGAATGTAGCTT TGGTCGAAGCTGGCTGTGTTAACTTGGCACGACATATAGCAAACACAAAGGCTTATGGCGTGAATGTTGTCGTTGCGGTGAATATGTTCTCGACGGACAC TGAAGCGGAAATGAATGCTGTTAAGAGCGCGGCAATGGCCGCTGGTGCATTTGATGCTGTTGTCTGTTCACACCATGCCCATGGCGGAAAAGGAGCGGTT AGTTATTTTTCCTCCCCCGATGGTGGAAAAGGAGCGGTGGATCTTGGGATTGCGGTCCAACGAGCCTGCGAGAATGTCAGTCAGCCATTGAAGTTTCTAT ACCCTCTGGAGATTGGTATCAAAGAGAAGATCGAGGCGATAGCAAAATCGTATGGTGCCAGTGGCGTAGAGTACTCAGAGCTGGCCGAGAAACAAATAGA GATGTACACTAAACAAGGATTCTCAGGTCTACCGATCTGCATGGCGAAAACACAGTATTCTTTTTCACACAATGCAGCTGAGAAGGGAGCTCCGAGCGGC TTCATCTTACCAATAAGGGATGTGAGGGCAAGCATAGGGGCTGGTTTCATCTACCCTTTAGTTGGAACAATGAGTACAATGCCTGGTCTTCCAACAAGAC CCTGCTTCTACGACATTGACATTGACACCACCACCGGAAAAGTCATCGGTCTCTCTTGA
AA sequence Show only first row Show all	>Lus10039200 pacid=23150691 polypeptide=Lus10039200 locus=Lus10039200.g ID=Lus10039200.BGIv1.0 annot-version=v1.0 MTSSSSSKTLRKLGVLSPVPADIDIANSVEPFHISEIASALNLRPSDYDLYGKYKAKVLLSVVDQLKGSSDGYYVVVGGITPTPLGEGKSTTTVGLCQAL GAFLDKKVVTCVRQPSQGPTFGIKGGAAGGGYSQIIPMDEFNLHMTGDIHAITAANNLLAAAIDTRIFHESTQSDKALLNRLCPPNREGKRKFTDIMFRR LNKVGITKTSPEELTPEEVKKFARLDLDPESVTWRRVMDVNDRFLRKISIGQGPDEKGMVRETAFDISVASEIMAVLALTTSLADMRERLGKMVVGNSRA GDPVTADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSVVADKIALKLVGPGGFVVTEAGFGADIGTEKFMNIKCRYSGLKPQCAV IVATIRALKMHGGGPPVVAGKPLNHAYTTENVALVEAGCVNLARHIANTKAYGVNVVVAVNMFSTDTEAEMNAVKSAAMAAGAFDAVVCSHHAHGGKGAV SYFSSPDGGKGAVDLGIAVQRACENVSQPLKFLYPLEIGIKEKIEAIAKSYGASGVEYSELAEKQIEMYTKQGFSGLPICMAKTQYSFSHNAAEKGAPSG FILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIDIDTTTGKVIGLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10039200 [exp]	0	1
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	8.0	0.9241
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10019478 [exp]	11.0	0.9048
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016471 [exp]	12.2	0.9069
AT2G04240		XERICO	RING/U-box superfamily protein...		Lus10034407 [exp]	13.0	0.8963
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10014831 [exp]	14.0	0.9009
AT5G18150			Methyltransferase-related prot...		Lus10020287 [exp]	15.7	0.9015
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	24.2	0.8962
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Lus10004392 [exp]	24.4	0.8580
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10029136 [exp]	26.1	0.8938
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	27.5	0.8922

Compare expression of checked genes

Lus10039200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.