Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58040 488 / 1e-175 SINAT2 seven in absentia of Arabidopsis 2 (.1) AT2G41980 473 / 5e-170 Protein with RING/U-box and TRAF-like domains (.1) AT3G61790 447 / 3e-159 Protein with RING/U-box and TRAF-like domains (.1) AT4G27880 437 / 4e-155 Protein with RING/U-box and TRAF-like domains (.1) AT5G53360 348 / 1e-121 TRAF-like superfamily protein (.1) AT3G13672 244 / 7e-81 TRAF-like superfamily protein (.1.2) AT5G37870 106 / 9e-27 Protein with RING/U-box and TRAF-like domains (.1) AT5G62800 102 / 1e-24 Protein with RING/U-box and TRAF-like domains (.1) AT5G37930 101 / 2e-24 Protein with RING/U-box and TRAF-like domains (.1) AT5G37890 100 / 2e-24 Protein with RING/U-box and TRAF-like domains (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013739 [exp] 638 / 0 AT3G58040 493 / 6e-178 seven in absentia of Arabidopsis 2 (.1) Lus10004001 [exp] 440 / 1e-156 AT3G61790 525 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10022405 [exp] 439 / 4e-156 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10018110 [exp] 439 / 5e-156 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10002761 [exp] 439 / 7e-156 AT3G61790 462 / 1e-164 Protein with RING/U-box and TRAF-like domains (.1) Lus10016348 [exp] 436 / 4e-154 AT3G61790 459 / 7e-163 Protein with RING/U-box and TRAF-like domains (.1) Lus10030248 [exp] 434 / 5e-154 AT3G61790 514 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10009111 [exp] 69 / 1e-13 AT5G37930 134 / 5e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10028535 [exp] 69 / 2e-13 AT5G37930 134 / 7e-38 Protein with RING/U-box and TRAF-like domains (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G215400 [exp] 526 / 0 AT3G58040 471 / 4e-169 seven in absentia of Arabidopsis 2 (.1) Potri.006G194100 [exp] 501 / 0 AT3G58040 560 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.016G059700 [exp] 492 / 2e-177 AT3G58040 548 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.001G010500 [exp] 491 / 2e-177 AT3G58040 455 / 3e-163 seven in absentia of Arabidopsis 2 (.1) Potri.014G099200 [exp] 451 / 9e-161 AT3G61790 551 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.002G171500 [exp] 449 / 7e-160 AT3G61790 558 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.012G015500 [exp] 448 / 9e-160 AT4G27880 542 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.T126006 [exp] 442 / 7e-158 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G198600 [exp] 442 / 7e-158 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.015G013000 [exp] 442 / 3e-157 AT4G27880 546 / 0.0 Protein with RING/U-box and TRAF-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF03145 [flax] [poplar] Sina Seven in absentia protein family
Representative CDS sequence Show only first row Show all	>Lus10039202 pacid=23150400 polypeptide=Lus10039202 locus=Lus10039202.g ID=Lus10039202.BGIv1.0 annot-version=v1.0 ATGGCCCCGGGAGGAGTCACCTGCAGAGAAGAGATAGAGCCTCGAATAACATATACAGATTGTGATACAGTAACATTCAATGCGGAGTCAAGTGCTTCTT CTTTTCGAAAAGCTGCCACTATGTTAGGTGGAAGTCTCGGGGCATCGTCAACTGGAAATGTTCAGGACTTGCTAGAATGTCCAGTTTGCATGAATCTCAT CTACCCTCCCATTTACCAGTGTCCTAATGGTCACACACTTTGCTCGAATTGCAAATCGCGAGTACATAACTCTTGCCCGACGTGTCGAGGGGAACTTGGA AACATAAGGTGCTTGGCTCTAGAGAAAGTAGCTGAATCGCTGGAAGTTCCTTGTAAATACCAGAACTTTGGGTGTTTTGAAATATTCCCGTACTATAGCA AGCAAAGGCATGAAAAGAGCTGCAAATATCGTCCTTATAGTTGCCCTTATGCCGGAGCTGAATGTTTGTTCACCGGTGACATTCCGCAGCTTGCCACACA TCTGAAGAATGATCACAAGGTCGATATGCATGATGGGTGTACGTTCAATCACAGATATGTCAAGTCCAATCCCCAAGAAATTGACAATGCCACATGGATG TTAACTGTTTTCAATTGCTTTGGCCGACAATTCTGCTTACACTTTGAGGCATTTCGTCTGGGAATGGCACCGGTTTACATGGCCTTCCTGAGATTCATGG GCACTGAAGAAGAGGCAAGACAATTTAGTTACAGCTTAGAAGTCGGCGGAAACGGGAGAAAGCTGATATGGCAAGGAATACCGAGGAGCATCCGCGATAG CCATAAGAAAGTACGGGATAGCCAGGATGGATTGATAATCCAGAGAAACTTGGCACTCTTCTTTTCTGGTGGGGATAGGCAGGAGCTGAAGCTCAAAGTG TCCGGACGTATATGGAAAGAACAATAA
AA sequence Show only first row Show all	>Lus10039202 pacid=23150400 polypeptide=Lus10039202 locus=Lus10039202.g ID=Lus10039202.BGIv1.0 annot-version=v1.0 MAPGGVTCREEIEPRITYTDCDTVTFNAESSASSFRKAATMLGGSLGASSTGNVQDLLECPVCMNLIYPPIYQCPNGHTLCSNCKSRVHNSCPTCRGELG NIRCLALEKVAESLEVPCKYQNFGCFEIFPYYSKQRHEKSCKYRPYSCPYAGAECLFTGDIPQLATHLKNDHKVDMHDGCTFNHRYVKSNPQEIDNATWM LTVFNCFGRQFCLHFEAFRLGMAPVYMAFLRFMGTEEEARQFSYSLEVGGNGRKLIWQGIPRSIRDSHKKVRDSQDGLIIQRNLALFFSGGDRQELKLKV SGRIWKEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58040		SINAT2	seven in absentia of Arabidops...		Lus10039202 [exp]	0	1
AT1G74840	MYB		Homeodomain-like superfamily p...		Lus10036652 [exp]	3.9	0.8351
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10028345 [exp]	4.7	0.8396
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10002960 [exp]	6.0	0.8213
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10000900 [exp]	9.2	0.8408
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10024882 [exp]	12.0	0.8336
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10002272 [exp]	12.5	0.8276
AT1G77660			Histone H3 K4-specific methylt...		Lus10028062 [exp]	19.3	0.8132
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Lus10023827 [exp]	21.8	0.8110
AT5G50000			Protein kinase superfamily pro...		Lus10042129 [exp]	32.9	0.7951
					Lus10026715 [exp]	34.8	0.8299

Compare expression of checked genes

Lus10039202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.