Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13670 1081 / 0 Protein kinase family protein (.1) AT2G25760 995 / 0 Protein kinase family protein (.1.2) AT3G03940 960 / 0 Protein kinase family protein (.1) AT5G18190 953 / 0 Protein kinase family protein (.1) AT3G03930 373 / 6e-125 protein kinase-related (.1) AT4G28860 183 / 2e-51 CKL4 casein kinase I-like 4 (.1.2) AT1G03930 184 / 4e-51 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT5G44100 184 / 5e-51 CKL7 casein kinase I-like 7 (.1) AT2G19470 183 / 7e-51 CKL5 casein kinase I-like 5 (.1) AT4G28880 182 / 1e-50 CKL3 casein kinase I-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042455 [exp] 1199 / 0 AT3G13670 1124 / 0.0 Protein kinase family protein (.1) Lus10026214 [exp] 1147 / 0 AT3G13670 1085 / 0.0 Protein kinase family protein (.1) Lus10013737 [exp] 1133 / 0 AT3G13670 979 / 0.0 Protein kinase family protein (.1) Lus10005479 [exp] 1001 / 0 AT2G25760 1093 / 0.0 Protein kinase family protein (.1.2) Lus10025827 [exp] 940 / 0 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2) Lus10014152 [exp] 906 / 0 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2) Lus10037565 [exp] 893 / 0 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2) Lus10024261 [exp] 878 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10023628 [exp] 865 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G009700 [exp] 1129 / 0 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.003G215700 [exp] 1120 / 0 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.018G046400 [exp] 1023 / 0 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.006G236600 [exp] 1014 / 0 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2) Potri.019G034500 [exp] 977 / 0 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.001G189100 [exp] 961 / 0 AT2G25760 1051 / 0.0 Protein kinase family protein (.1.2) Potri.003G049700 [exp] 945 / 0 AT2G25760 1041 / 0.0 Protein kinase family protein (.1.2) Potri.018G065900 [exp] 186 / 1e-51 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 186 / 2e-51 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.010G070400 [exp] 185 / 2e-51 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10039203 pacid=23150724 polypeptide=Lus10039203 locus=Lus10039203.g ID=Lus10039203.BGIv1.0 annot-version=v1.0 ATGCCTAAGCTCCGCAGAGGTGTAGCAAGAGGTCGCGCAGGGTTAGCGCCTGAAGGCAACAACCAGCGATCGGAGCCTCCCGCCGCCGCCAGAGAGGGAA ATCAGAGGCCGAGGACAAGATTGGAGTCGAAGCGATTGAAGGAGAAGGAGGAGCAGGAGAATAATAGAAGGGAGGTTGTTGTGATATCGGATAGAGAAGA GAGCGAGAGAATAGTAAAAGTCGGTAGTTTGGTTCCAGTTGTTAACCTTGAAGCGGGAGAAGAAGAGGTTAGAGTTGGCGGAATGGCTGACGATAGTGGT GGTTTGAGTGCTAATAATGCCGCTGGGCAGGAAGAAGAGGGGACTACTACCCCTTTCCCTGAAAGAGTTCAAGTGGGAGGGTCACCAGTGTACAAGATAG AAAGGAAGTTGGGTAAAGGTGGTTTTGGTCAAGTTTTCGTTGGTCGTCGTGTAACCGGTGGAAATGAACGTGGAACAGGGGCTAGTGCTATGGAGGTGGC CGTGAAGTTTGAACACAGAAATAGCAAAGGCTGTAATTACGGCCCTCCTTATGAATGGCAAGTTTACAACACCCTTGGTGGCAGCTATGGGGTGCCCAGA GTACACTTTAAAGGAAGGCATGGAGATTATTATGTTATGGTTATGGATATGCTTGGGCCAAGCCTGTGGGATGTTTGGAATTCTTCTGGTCAAGCGATGT CCGCGGAAATGGTATCTTGTATAGCTGTGGAGTCCCTTACCATCCTAGACAAAATGCACGCACGTGGCTATGTGCACGGGGATGTAAAGCCAGAGAACTT CTTACTTGGTCAGCCAGCTACAGCACAGGAGAAGAAACTTTTTCTTGTGGACCTGGGATTAGCTACAAAGTGGAGAGACAGTAGCAGTGGGGAACATGTC GAATATGACCAACGTCCTGATATGTTTCGGGGTACTGTGCGATATGCCAGCGTTCACGCTCATTTGGGAAGGACAGCTAGTCGGAGAGATGATCTTGAAT CGCTGGCTTACACTCTGATCTTCCTGCATCGAGGCAGGTTGCCCTGGCAAGGCTATCAGGGTGACAATAAGTCCTTTCTAGTATGCAAAAAGAAAATGGC AACGTCTCCCGAGATGTTGTGCTGCTTCTGTCCCCAACCTCTCAAGCAGTTTCTTGAGATTGTGGTCAATTTGAAATTTAACGAGGAACCAAACTATTCC AAGCTTATATCTCTATTTGAGGGCTTGTTAGGGCCAAATCCAGCAATAAGGCCTATAAACACAGAGGGGGCTCAAAAGATTATCTCTCAAGTTGGTCAGA AACGTGGTCGGTTAAATATGGAGGAAGATGATGGGCAACCAAGAAAGAAGGTTCGGCTTGGAGTTCCTGCTACACAATGGATTTCAATTTATAATGCGAG GCGACCAATGAAACAGAGGTACCACTACAATGTTGCTGATGGAAGGTTGGCACAACATGTGGAGAGAGGAATTGCCGATGGTCTTCTTATAAGTTCCGTG GCGTCTTGTTCCAATCTTTGGGCGTTGATTATGGATGCCGGAACCGGTTTTAGTAGTCAAGTTTATGAACTGTCCCCCTTTTTCTTGCACAAGGAGTGGA TTATGGAACAATGGGAGAAGAACTACTACATTAGCTCAGTTGCTGGCTCGAATAATGGTAGCTCACTTGTAGTTATGTCCAAAGGCACTCAATACACTCA ACAGTCTTACAAGGTCAGCGATTCGTTCCCCTTCAAATGGATCAACAAGAAGTGGAAGGAAGGATTTCATGTGACCTCAATGGCAACTGCTGGATCCCGT TGGGGTATCGTCATGTCCCGTAATGCCGGGTTCAGCGATCAGGTTGTGGAGCTTGATTTTCTGTATCCGAGTGAAGGCATTCACCGTAGATGGGACGGTG GGTTCCGAATAACGTCAACAGCAGCTACATCCGATCAAACCGCTCTAATCTTAAGTGTTCCCAGGCGCAGACCTAATGATGAAACTCAAGAGACATTGCG AACATCTCAATTCCCAAGCACCCATGTGAAGGAAAAATGGTCAAAGAATCTATACCTAGCATCCATCTGCTATGGGCGGACTGTTTCGTGA
AA sequence Show only first row Show all	>Lus10039203 pacid=23150724 polypeptide=Lus10039203 locus=Lus10039203.g ID=Lus10039203.BGIv1.0 annot-version=v1.0 MPKLRRGVARGRAGLAPEGNNQRSEPPAAAREGNQRPRTRLESKRLKEKEEQENNRREVVVISDREESERIVKVGSLVPVVNLEAGEEEVRVGGMADDSG GLSANNAAGQEEEGTTTPFPERVQVGGSPVYKIERKLGKGGFGQVFVGRRVTGGNERGTGASAMEVAVKFEHRNSKGCNYGPPYEWQVYNTLGGSYGVPR VHFKGRHGDYYVMVMDMLGPSLWDVWNSSGQAMSAEMVSCIAVESLTILDKMHARGYVHGDVKPENFLLGQPATAQEKKLFLVDLGLATKWRDSSSGEHV EYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHRGRLPWQGYQGDNKSFLVCKKKMATSPEMLCCFCPQPLKQFLEIVVNLKFNEEPNYS KLISLFEGLLGPNPAIRPINTEGAQKIISQVGQKRGRLNMEEDDGQPRKKVRLGVPATQWISIYNARRPMKQRYHYNVADGRLAQHVERGIADGLLISSV ASCSNLWALIMDAGTGFSSQVYELSPFFLHKEWIMEQWEKNYYISSVAGSNNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWKEGFHVTSMATAGSR WGIVMSRNAGFSDQVVELDFLYPSEGIHRRWDGGFRITSTAATSDQTALILSVPRRRPNDETQETLRTSQFPSTHVKEKWSKNLYLASICYGRTVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13670			Protein kinase family protein ...		Lus10039203 [exp]	0	1
AT3G26990			ENTH/VHS family protein (.1)		Lus10020327 [exp]	2.0	0.8560
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017320 [exp]	3.2	0.8487
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	5.7	0.8252
AT1G67170			unknown protein		Lus10030976 [exp]	6.5	0.8142
AT2G17030			F-box family protein with a do...		Lus10022650 [exp]	6.7	0.8098
AT4G24200			Transcription elongation facto...		Lus10028515 [exp]	7.1	0.8450
AT4G39100		SHL1	short life, PHD finger family ...		Lus10028801 [exp]	8.2	0.7912
AT4G22360			SWIB complex BAF60b domain-con...		Lus10014892 [exp]	9.5	0.7974
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022543 [exp]	9.6	0.7767
AT3G27260		GTE8	global transcription factor gr...		Lus10032076 [exp]	9.8	0.7998

Compare expression of checked genes

Lus10039203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.