Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19640 619 / 0 Major facilitator superfamily protein (.1) AT1G32450 546 / 0 NRT1.5 nitrate transporter 1.5 (.1) AT4G21680 510 / 8e-175 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT3G54140 391 / 8e-129 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G62200 380 / 2e-124 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02040 375 / 1e-122 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G01180 364 / 3e-118 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G26690 314 / 7e-99 Major facilitator superfamily protein (.1) AT2G02020 311 / 3e-98 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT5G13400 306 / 2e-95 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013736 [exp] 1041 / 0 AT5G19640 728 / 0.0 Major facilitator superfamily protein (.1) Lus10030945 [exp] 537 / 0 AT1G32450 920 / 0.0 nitrate transporter 1.5 (.1) Lus10040102 [exp] 531 / 0 AT1G32450 910 / 0.0 nitrate transporter 1.5 (.1) Lus10000673 [exp] 523 / 1e-179 AT1G32450 931 / 0.0 nitrate transporter 1.5 (.1) Lus10011058 [exp] 521 / 7e-179 AT1G32450 926 / 0.0 nitrate transporter 1.5 (.1) Lus10040099 [exp] 412 / 1e-136 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 410 / 5e-136 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 409 / 2e-135 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040100 [exp] 401 / 2e-132 AT2G02040 835 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G013400 [exp] 718 / 0 AT5G19640 754 / 0.0 Major facilitator superfamily protein (.1) Potri.003G212900 [exp] 714 / 0 AT5G19640 750 / 0.0 Major facilitator superfamily protein (.1) Potri.001G145200 [exp] 550 / 0 AT1G32450 949 / 0.0 nitrate transporter 1.5 (.1) Potri.003G088800 [exp] 544 / 0 AT1G32450 979 / 0.0 nitrate transporter 1.5 (.1) Potri.014G179400 [exp] 535 / 0 AT1G32450 791 / 0.0 nitrate transporter 1.5 (.1) Potri.010G100200 [exp] 412 / 1e-136 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 389 / 9e-128 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 378 / 1e-123 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.011G120000 [exp] 372 / 2e-121 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.006G096800 [exp] 372 / 2e-121 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10039204 pacid=23150351 polypeptide=Lus10039204 locus=Lus10039204.g ID=Lus10039204.BGIv1.0 annot-version=v1.0 ATGGGTAATGACCAGGGTTTGAGTAAATATGATTCCATGCAGGCGAGTGGGAGTAAGAGTGACGAAGCAATGGAGCATAACCATGGAACCATCGAAGCTC ACAAAGAGGATCGAATTCAACCAGAAACAAGCCATGTGATTCCCACTATCGTAACTTCTGTCGAGAATGTCGACGACCAAACCTCTCCCATTGTGGCCAG GGGCAGAGGTGGTTGGGTAGCTGCATTCCTGTTGCTAGCGAATCAAGCGCTGGCGACGCTGGCGTTCTTCGGAGTAGGGGTGAATCTGGTGCTGTTTTTG GCGAGAGTGATGGGGAGAAGCAATGCGGATGCTGCAAATGATGTTAGCATTTGGACTGGAACTGTCTACCTTTTCTCCCTCCTTGGAGCTTTCCTCAGCG ACTCTTACTGGGGCCGCTTCAACACCTGCGGCATCTTCCAAGCCGTCTTCGTTGTGGGTCTGGTGCTGGTCACAGTATCATCAGGAGTATACCTGATAAA GCCCAACAACTGCGGAGACGGCTTTCTGGACTGCAACCCAGCGAGGAACCCTGGCTCAGCCATCTTCAATCTCGCGATCTACTTAGTAGCTCTAGGCTAT GGCGGCCACCAGCCGACTCTGGCCACTTTCGGAGCGGACCAGTTCGACGAGTCAAACCCCAGTACGCTGGACGCAAGGGCGGCTTTCTTCTGCTACTTCT ACTTCGCACTCAACTGCGGCTCGCTGATCTCCAACACCGTCATCGTCTACTACGAGGACACCGGGAAATGGACCATCGGCTTCATCGCCTCCCTCGGCGC CGCGGTCCTCGCTCTCGTGCTCTACCTCGCCGGCATGCCTTTCTACCGCTACATCAAGCCCTGCGGCAATCCTTTGCCACGCGTCGCCCAGGTCTTCGTC GCCGCCGTCAGGAAGCGCAAGGCCCCGTCTGTCGCCCCTGAATGGCTTTACGAGGTTGAAGGGACTGAATCGGCGATTAAAGGTAGCCGGAAGATCAACC ACAGCAATGAATTCGAGAGCTTAGACAAAGCAGCAACGATCATAGAAGGCGAGAATCCAGAGGAGAGGCATCCATGGAGGCTATGCACAGTGACACAGGT TGAGGAAGCCAAATGTGTGCTGAAAATGCTGCCAATTTGGCTCTGCACAATCATCTACTCGGTGGTTTTCACCCAAATGGCGTCGTTCTTCGTGGAGCAA GGGGATGTGATGAACACCACCATTGGGAACTTCCGCCTCCCAGCAGCGAGCATGTCAGCATTCGACATCTGCTCCGTGCTAATCTGCACGGGAATCTACC GCCAGGTGCTCGTCCCAATAGCCGAGAAGCTGAGCGGAAATCCCAAGGGACTAACCGAGTTGCAGAGGATGGGAGTCGGGCTAATCATCGGAATGTTCGC CATGATCGCTGCAGCAATCACCGAGGTGTTCAGGCTGAAGAACGTCAGCCATGGGGAAAAGGTCAGCAAGCTGAGTGTGTTCTGGCAGATCCCACAGTAC GCACTTGTCGGTTGTTCTGAAGTTTTCATGTACGTGGGTCAGTTGGAGTTCTTCAACGGGCAGGCTCCCGACGGGATCAAGAGCTTGGGGAGCTCGCTCT GCATGGCTTCGATCTCTTTAGGGAACTATGTCAGCAGCTTGCTTGTGAACATGGTGATGATCATAACTGCAAGAGGGGAGAATCCAGGGTGGATCCCTGA AGATTTGAATGAGGGTCGGATGGATTTGTACTATGGAACGATTGCAGCTTTCACGCTCGTTGATTTCGTAATTTATCTAGGCTGTGCGAAGTGGTACCAA CCGATCAGTCTGGATTATGGTCATGGCAAAGAGGCTGAGATTGTGGAAGTGGTGGAAGTGCAGCAGGAAGATGATCATCAAGCTGGAGCAGATGAACATC AAGTGCTTGGAAGAGCTTGA
AA sequence Show only first row Show all	>Lus10039204 pacid=23150351 polypeptide=Lus10039204 locus=Lus10039204.g ID=Lus10039204.BGIv1.0 annot-version=v1.0 MGNDQGLSKYDSMQASGSKSDEAMEHNHGTIEAHKEDRIQPETSHVIPTIVTSVENVDDQTSPIVARGRGGWVAAFLLLANQALATLAFFGVGVNLVLFL ARVMGRSNADAANDVSIWTGTVYLFSLLGAFLSDSYWGRFNTCGIFQAVFVVGLVLVTVSSGVYLIKPNNCGDGFLDCNPARNPGSAIFNLAIYLVALGY GGHQPTLATFGADQFDESNPSTLDARAAFFCYFYFALNCGSLISNTVIVYYEDTGKWTIGFIASLGAAVLALVLYLAGMPFYRYIKPCGNPLPRVAQVFV AAVRKRKAPSVAPEWLYEVEGTESAIKGSRKINHSNEFESLDKAATIIEGENPEERHPWRLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASFFVEQ GDVMNTTIGNFRLPAASMSAFDICSVLICTGIYRQVLVPIAEKLSGNPKGLTELQRMGVGLIIGMFAMIAAAITEVFRLKNVSHGEKVSKLSVFWQIPQY ALVGCSEVFMYVGQLEFFNGQAPDGIKSLGSSLCMASISLGNYVSSLLVNMVMIITARGENPGWIPEDLNEGRMDLYYGTIAAFTLVDFVIYLGCAKWYQ PISLDYGHGKEAEIVEVVEVQQEDDHQAGADEHQVLGRA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19640			Major facilitator superfamily ...		Lus10039204 [exp]	0	1
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10031285 [exp]	9.9	0.8571
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	20.4	0.8434
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10020664 [exp]	21.2	0.7669
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10003260 [exp]	28.9	0.8259
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10029814 [exp]	29.7	0.7601
AT4G30000			Dihydropterin pyrophosphokinas...		Lus10036922 [exp]	29.8	0.8193
AT1G05030			Major facilitator superfamily ...		Lus10030010 [exp]	50.7	0.8104
AT3G20840	AP2_ERF	PLT1	PLETHORA 1, Integrase-type DNA...		Lus10031831 [exp]	54.8	0.8099
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036043 [exp]	62.6	0.7753
					Lus10011277 [exp]	81.2	0.7841

Compare expression of checked genes

Lus10039204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.