Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51130 322 / 2e-107 Nse4, component of Smc5/6 DNA repair complex (.1) AT3G20760 295 / 7e-97 Nse4, component of Smc5/6 DNA repair complex (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013735 [exp] 675 / 0 AT1G51130 368 / 2e-125 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10042459 [exp] 399 / 3e-137 AT1G51130 342 / 3e-115 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10021041 [exp] 111 / 2e-28 AT1G51130 108 / 6e-28 Nse4, component of Smc5/6 DNA repair complex (.1) Lus10004185 [exp] 93 / 6e-22 AT3G20760 94 / 1e-22 Nse4, component of Smc5/6 DNA repair complex (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T028032 [exp] 374 / 9e-128 AT1G51130 395 / 3e-136 Nse4, component of Smc5/6 DNA repair complex (.1) Potri.003G212600 [exp] 372 / 3e-127 AT1G51130 394 / 9e-136 Nse4, component of Smc5/6 DNA repair complex (.1) Potri.016G046802 [exp] 326 / 4e-109 AT1G51130 361 / 7e-123 Nse4, component of Smc5/6 DNA repair complex (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08743 [flax] [poplar] Nse4_C Nse4 C-terminal
Representative CDS sequence Show only first row Show all	>Lus10039205 pacid=23150460 polypeptide=Lus10039205 locus=Lus10039205.g ID=Lus10039205.BGIv1.0 annot-version=v1.0 ATGCGGTCTGTGAAGCGGGAACGCACTAGCGCCGCCGCCGCCGCTCATGGAGGAGGAGGTGAAGAGCGGGTTCTTAGGAATACTAAGCAGGAGCGAGTCC GAGCTAACTTGCGTACGGCCCGGGAGGAAGGCGAGGAGCCTGAGCAAGGTGTTGAGGAAAGGAGAATCCTTCGATCCAAATACCGTGCCTTACAAACTAG GATCAACGAGGAGAGGGATGATCTGACAAATGTTGATTCGGATAAGTTCGGCTCGTTTATGAAGGAGGTTGATGATTTGCACCAACACGTTCAGAAGCCA AGGGAGCAGGTTGCTGATGCAGAGGCATTGTTGGGGTTAACTTCCTCATTAGTTTCCTCTGTTAAGTCACAATCTACTGACGGTGTTACAGTTGGAGGAT TTATCGCTCAATTGAAGAATGCCTTTTGGCAACCTGCAACTGGTTTAGATGATCAGGAAAATGTCCCGATTTCAGTCAATTGGAAGGAGATTGGGCTCTT TGTTTCGCCTATATTTAAGAACTTCAGAGGGTTTACCACCATGTTGGGGCCAATGGATACTGAGATCAAACTAAGGAAGCACAATGTAACTCAGAGGGCC CGAACAAAGCCCGGTCAGAGTACACGTCCAGAAGAAGTTAATAATACTGGAGCTGAAGAGAGAACTGATACTGATAAAAACATGGCAACCATGTTTGGGG TCTTGAGGAGCAAGAAACGTGTAAGGCTCGAAAGTTTGATCTTGAATAGGAGATCTTTTGCCCAGACTGTGGAGAACCTGTTTGCACTTTCTTTCTTAGT GAAAGATGGCCGGGTTGAGATTGTTGTGGACGATAATAACACTCATTTTGTCTTACCAAGGAATGCCCCAGCTGCTGATTCTGTCGTCTCAAAGGAGGTT GCATACAGACACTTTGTCTTCAGATTTGACTTCCAAGATTGGAAGTTTATGCTCAGTGGGGTACCTGATGGTGAAGAACTGATGCCAGACCGAAATACCG AAACTCCTGCTTCAATGGACCCTGGTGCTTCCAGCACTCAAGGTGCACAACCACGAGCTGCAATGGACCCTGGTCCTTCCAACTATCAAGGTGCACAACC ACGAACACCGATACGTAAACTGACAAGGAACCGTGGGTTCGTTGTACAGAATGAAACGGTTGAGGAGACTCCTGAAGAAGATGATGACGATGCTCTTCTT AGGAGAACTGGTGTCAATCGGTGCAAGCGTAGGCTTGTTTAA
AA sequence Show only first row Show all	>Lus10039205 pacid=23150460 polypeptide=Lus10039205 locus=Lus10039205.g ID=Lus10039205.BGIv1.0 annot-version=v1.0 MRSVKRERTSAAAAAHGGGGEERVLRNTKQERVRANLRTAREEGEEPEQGVEERRILRSKYRALQTRINEERDDLTNVDSDKFGSFMKEVDDLHQHVQKP REQVADAEALLGLTSSLVSSVKSQSTDGVTVGGFIAQLKNAFWQPATGLDDQENVPISVNWKEIGLFVSPIFKNFRGFTTMLGPMDTEIKLRKHNVTQRA RTKPGQSTRPEEVNNTGAEERTDTDKNMATMFGVLRSKKRVRLESLILNRRSFAQTVENLFALSFLVKDGRVEIVVDDNNTHFVLPRNAPAADSVVSKEV AYRHFVFRFDFQDWKFMLSGVPDGEELMPDRNTETPASMDPGASSTQGAQPRAAMDPGPSNYQGAQPRTPIRKLTRNRGFVVQNETVEETPEEDDDDALL RRTGVNRCKRRLV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10039205 [exp]	0	1
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10007882 [exp]	1.0	0.8860
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10008003 [exp]	10.2	0.8136
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Lus10012141 [exp]	10.5	0.7797
AT4G32050			neurochondrin family protein (...		Lus10001536 [exp]	10.6	0.8071
AT1G48170			unknown protein		Lus10022781 [exp]	16.2	0.7435
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009960 [exp]	19.3	0.8388
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Lus10001625 [exp]	21.7	0.7904
AT1G48620		HON5	high mobility group A5 (.1)		Lus10032231 [exp]	22.2	0.7670
					Lus10008493 [exp]	28.1	0.7050
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10018440 [exp]	29.3	0.7509

Compare expression of checked genes

Lus10039205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.