Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56000 456 / 1e-160 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G55980 399 / 4e-137 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT3G04650 100 / 3e-23 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013734 [exp] 595 / 0 AT1G56000 497 / 4e-177 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10042542 [exp] 108 / 1e-25 AT3G04650 585 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10022002 [exp] 107 / 2e-25 AT3G04650 588 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G438500 [exp] 475 / 3e-168 AT1G56000 528 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.005G055800 [exp] 102 / 6e-24 AT3G04650 657 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01266 [flax] [poplar] DAO FAD dependent oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10039206 pacid=23150574 polypeptide=Lus10039206 locus=Lus10039206.g ID=Lus10039206.BGIv1.0 annot-version=v1.0 ATGAACACCGTTGCCTCCAAAGTTGCCGTGGTTGGAAGTGGAATATCAGGAGCAGTATGTGCATCCACTCTGGCCAAACATGGCATCTCGGTTACTCTTT TCGACTCCGCAAGAGGCCCTGGTGGCCGCATGTCTCGCAGAAAGGAAATTTGTGAAGATGGGAAGGAGCTGTTGTTTGACCATGGAGCTCCCTTCTTCTG TGCAAGCAACAATGATGTGTTGAACCTTGTTCATGATTGGGAATCGAAAGGCCTTGTTGCTGAGTGGAGACACAGCTTTGGGGATTTTGATTTCAGCTCA GAAGGGTTCCTTAACATTGAAAAGGAATACACAGCCAAGAGATATGTTGGTGTACCAGGCATGAACTCTATATGCAGAGCTTTGAGCAGCGAAACTGGTG TGGAGAGTAAGTTTGGTGTCGGAATTGGAAAGATAGAATGGTTAGATGACGAGAAATCGTGGTCATTGACCAGCTCTGGTGGTCAAGAACTTGGTCATTT TAGGGGAGTGGTAGCATCCGACAAGAACATTGCTTCATCGAGATATACTGAGGTGACTGGATTTCCGCCACCCCTTGATTTGAGTTTTTTTCCCGAGTTG GAAGGCAAGTTACAGGACATTCCTGTCAATCCATGTTTTTCAGTGATGATGGCTTTCACAGAGCCTTTGTCGTCAATACCTGTAAAAGGCATAGCTTTCA GAAACTCAGACGTCTTGAGTTGGGGCTACTGTGACAGCAGCAAACCCTCACGTCCAGCCACAAGCGAAAGATGGGTGCTTTATTCGACTGCCAAGTATGC AAGGAGTGTAATTGCTGAGACCGGACTCAAGAAGCTTTCAAGTGAAGCATTGAACAAAGTTGCTGAAGAAGTGCTGTCGGAATTTCAAAGCACCGGATTA CATATCCCTCGCCCTTTCTTCAAGAGAGCTCATCGTTGGGGAAGTGCTTTCCCGGCGGCGAGCGTAGCTGGAGAAGAGAAATGCCTGTGGAGTGGGGAGA GGAAAGTGGCAATTTGTGGAGACTTTTGTGTGAGTCCAAATGTGGAAGGTGCAATACTCAGTGGGATTGCTGCTGCTTCGAAGCTTTCAGCTTCACTTCT CAGCTGTTCTTCAAAGTGCTAA
AA sequence Show only first row Show all	>Lus10039206 pacid=23150574 polypeptide=Lus10039206 locus=Lus10039206.g ID=Lus10039206.BGIv1.0 annot-version=v1.0 MNTVASKVAVVGSGISGAVCASTLAKHGISVTLFDSARGPGGRMSRRKEICEDGKELLFDHGAPFFCASNNDVLNLVHDWESKGLVAEWRHSFGDFDFSS EGFLNIEKEYTAKRYVGVPGMNSICRALSSETGVESKFGVGIGKIEWLDDEKSWSLTSSGGQELGHFRGVVASDKNIASSRYTEVTGFPPPLDLSFFPEL EGKLQDIPVNPCFSVMMAFTEPLSSIPVKGIAFRNSDVLSWGYCDSSKPSRPATSERWVLYSTAKYARSVIAETGLKKLSSEALNKVAEEVLSEFQSTGL HIPRPFFKRAHRWGSAFPAASVAGEEKCLWSGERKVAICGDFCVSPNVEGAILSGIAAASKLSASLLSCSSKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56000			FAD/NAD(P)-binding oxidoreduct...		Lus10039206 [exp]	0	1
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10004807 [exp]	2.8	0.8230
AT4G15930			Dynein light chain type 1 fami...		Lus10037494 [exp]	5.7	0.8168
AT4G15930			Dynein light chain type 1 fami...		Lus10006500 [exp]	6.3	0.7938
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10001539 [exp]	7.9	0.8118
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Lus10037109 [exp]	9.9	0.7822
AT4G23820			Pectin lyase-like superfamily ...		Lus10023101 [exp]	12.1	0.7909
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10033850 [exp]	15.6	0.7741
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10013344 [exp]	16.3	0.7674
AT5G25170			PPPDE putative thiol peptidase...		Lus10005341 [exp]	19.7	0.7515
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10000280 [exp]	21.9	0.7395

Compare expression of checked genes

Lus10039206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.