Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23750 162 / 2e-50 Remorin family protein (.1.2) AT3G48940 159 / 2e-49 Remorin family protein (.1) AT3G61260 156 / 6e-48 Remorin family protein (.1) AT2G45820 135 / 5e-40 Remorin family protein (.1) AT1G63295 80 / 4e-19 Remorin family protein (.1) AT2G41870 56 / 3e-09 Remorin family protein (.1) AT1G30320 54 / 1e-08 Remorin family protein (.1) AT3G57540 54 / 1e-08 Remorin family protein (.1) AT1G67590 54 / 2e-08 Remorin family protein (.1.2) AT1G53860 47 / 3e-06 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027460 [exp] 259 / 9e-89 AT3G61260 192 / 2e-62 Remorin family protein (.1) Lus10018840 [exp] 144 / 4e-43 AT3G61260 206 / 1e-67 Remorin family protein (.1) Lus10017811 [exp] 142 / 1e-42 AT3G61260 199 / 5e-65 Remorin family protein (.1) Lus10014785 [exp] 131 / 1e-38 AT3G61260 177 / 1e-56 Remorin family protein (.1) Lus10001477 [exp] 124 / 2e-35 AT5G23750 162 / 3e-50 Remorin family protein (.1.2) Lus10008477 [exp] 120 / 8e-34 AT5G23750 154 / 5e-47 Remorin family protein (.1.2) Lus10030379 [exp] 118 / 1e-33 AT3G61260 178 / 4e-57 Remorin family protein (.1) Lus10008014 [exp] 114 / 2e-32 AT5G23750 158 / 5e-50 Remorin family protein (.1.2) Lus10024514 [exp] 91 / 3e-23 AT5G23750 113 / 5e-32 Remorin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G081300 [exp] 161 / 2e-50 AT3G61260 199 / 4e-65 Remorin family protein (.1) Potri.015G143600 [exp] 154 / 4e-47 AT5G23750 111 / 1e-30 Remorin family protein (.1.2) Potri.002G157700 [exp] 151 / 4e-46 AT3G61260 167 / 2e-52 Remorin family protein (.1) Potri.012G140800 [exp] 144 / 2e-43 AT5G23750 98 / 2e-25 Remorin family protein (.1.2) Potri.003G124400 [exp] 139 / 2e-41 AT5G23750 129 / 6e-38 Remorin family protein (.1.2) Potri.001G107000 [exp] 110 / 3e-30 AT5G23750 55 / 2e-09 Remorin family protein (.1.2) Potri.008G178300 [exp] 58 / 5e-10 AT1G67590 306 / 1e-102 Remorin family protein (.1.2) Potri.006G053200 [exp] 57 / 6e-10 AT3G57540 196 / 2e-61 Remorin family protein (.1) Potri.016G054400 [exp] 57 / 1e-09 AT2G41870 206 / 7e-66 Remorin family protein (.1) Potri.008G144300 [exp] 56 / 3e-09 AT2G02170 431 / 5e-147 Remorin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03766 [flax] [poplar] Remorin_N Remorin, N-terminal region PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10039215 pacid=23175460 polypeptide=Lus10039215 locus=Lus10039215.g ID=Lus10039215.BGIv1.0 annot-version=v1.0 ATGGCAGAGGAAGAAGCTAAGAAGCTCGTCCCTGAATCCCCTGCGGCGGCCACCGTCGTCGTCGAACCTCCCCCGGCCGCTGAAGAGCCTCCAAAGGATG TTGCTGAGGAGAAATCCGTAATTCCAACTCCTCCTTCTGAAGAAAAACCTGATGATTCCTCCAAGGCCATCGTTCCCCTCCAAAAGGAAGCTGAGCCAGT TTCAGAGGAGGCAAAGCCTGTTGAGGGATCTGTCAATCGAGATTTGGAGCTGGCCAGAGTAGAAACAGAGAAGAGATTGTCTTTTATCAAAGCCTGGGAA GAGAGTGAAAAGAGCAAAGCTGAGAACAAGGCTCACAAGAAGGTCTCTGCAATTGAGTCATGGGAGAACAGCAAGAAAGCAGCTGTCGAGGCACAGCTCA GACAGTACGAGGAAAAACTGGAGAAGCAGAAGGCGGAGTATGCAGAGAAGATGAAGAACAAGATCGCCGAAATCCACAAGCTGGCCGAGGAAAAGAGGGC CACGATCGAAGCCAAACGAGGCGAAGATATGTTGAAGGCGGAGGAGATGGCTGCAAAGTACCGTGCTACAGGGACGACTCCGAAGAACCCACTTGGCTTC GGTTGTTTCTGA
AA sequence Show only first row Show all	>Lus10039215 pacid=23175460 polypeptide=Lus10039215 locus=Lus10039215.g ID=Lus10039215.BGIv1.0 annot-version=v1.0 MAEEEAKKLVPESPAAATVVVEPPPAAEEPPKDVAEEKSVIPTPPSEEKPDDSSKAIVPLQKEAEPVSEEAKPVEGSVNRDLELARVETEKRLSFIKAWE ESEKSKAENKAHKKVSAIESWENSKKAAVEAQLRQYEEKLEKQKAEYAEKMKNKIAEIHKLAEEKRATIEAKRGEDMLKAEEMAAKYRATGTTPKNPLGF GCF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61260			Remorin family protein (.1)		Lus10039215 [exp]	0	1
AT3G61260			Remorin family protein (.1)		Lus10027460 [exp]	1.0	0.8627
					Lus10002975 [exp]	1.7	0.8266
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Lus10019925 [exp]	3.2	0.8413
AT5G47900			Protein of unknown function (D...		Lus10027468 [exp]	7.7	0.7950
AT5G05840			Protein of unknown function (D...		Lus10004669 [exp]	8.7	0.7600
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10005653 [exp]	9.7	0.7640
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10014417 [exp]	11.5	0.7764
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10019916 [exp]	12.2	0.7809
AT1G56720			Protein kinase superfamily pro...		Lus10006215 [exp]	14.0	0.8038
AT5G27930			Protein phosphatase 2C family ...		Lus10015206 [exp]	14.5	0.7635

Compare expression of checked genes

Lus10039215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.