Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19120 78 / 1e-17 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021939 [exp] 201 / 2e-64 AT5G19120 228 / 4e-71 Eukaryotic aspartyl protease family protein (.1) Lus10041004 [exp] 161 / 1e-50 AT5G19120 104 / 4e-26 Eukaryotic aspartyl protease family protein (.1) Lus10041225 [exp] 77 / 3e-17 AT1G03220 369 / 2e-125 Eukaryotic aspartyl protease family protein (.1) Lus10021936 [exp] 72 / 2e-15 AT1G03220 536 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021938 [exp] 71 / 7e-15 AT1G03220 501 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10041224 [exp] 69 / 2e-14 AT1G03220 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041223 [exp] 68 / 4e-14 AT1G03220 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041226 [exp] 60 / 3e-11 AT1G03220 382 / 1e-130 Eukaryotic aspartyl protease family protein (.1) Lus10022958 [exp] 0 / 1 AT1G03230 78 / 3e-17 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203100 [exp] 102 / 2e-26 AT1G03220 280 / 3e-90 Eukaryotic aspartyl protease family protein (.1) Potri.008G203200 [exp] 76 / 9e-17 AT1G03220 509 / 6e-180 Eukaryotic aspartyl protease family protein (.1) Potri.006G068900 [exp] 72 / 1e-15 AT1G03220 456 / 5e-159 Eukaryotic aspartyl protease family protein (.1) Potri.002G054900 [exp] 67 / 6e-14 AT1G03220 544 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G065100 [exp] 62 / 4e-12 AT1G03220 298 / 5e-97 Eukaryotic aspartyl protease family protein (.1) Potri.001G240600 [exp] 61 / 2e-11 AT1G03230 293 / 4e-95 Eukaryotic aspartyl protease family protein (.1) Potri.019G064800 [exp] 60 / 3e-11 AT1G03230 290 / 1e-93 Eukaryotic aspartyl protease family protein (.1) Potri.019G064700 [exp] 59 / 4e-11 AT1G03230 291 / 3e-94 Eukaryotic aspartyl protease family protein (.1) Potri.019G065200 [exp] 58 / 1e-10 AT1G03230 303 / 4e-99 Eukaryotic aspartyl protease family protein (.1) Potri.019G065000 [exp] 57 / 2e-10 AT1G03220 309 / 3e-101 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039217 pacid=23175690 polypeptide=Lus10039217 locus=Lus10039217.g ID=Lus10039217.BGIv1.0 annot-version=v1.0 ATGTTGAACGGCCTGACAAGCGGCGCTCTTGGAATGATCGGATTAGGAGGAAGAAAGAGTCGGATCTCCCCGACGGCGCAGTTCGCGTCAGCATTCGGCT TCCGAAGCAAGAGGTTCGTCCTCTGCTTTCGAAATTCTGACCTCGGCGTATTGACGTTCGGTGATTCTCCTATTGAATCCGTATTCGGAACAGAGATATC AAAGTATCTACTTTACACTCCCCTCATTGCCTCCCCTTCCCCTTCCGGCGCCGGATACTTCATCAATCCGAAATCGATCAGAATCGATGGCGAGAAGGTT TCTGTAAACAAAGATAGAACCTGGTTAACGAAATTAAGTACAACGGTGCCTTGCACTTTAACGGAGAGCTGGTTATACAAAATCTTTGCTCCCACAACCT TATGCATATCGTAA
AA sequence Show only first row Show all	>Lus10039217 pacid=23175690 polypeptide=Lus10039217 locus=Lus10039217.g ID=Lus10039217.BGIv1.0 annot-version=v1.0 MLNGLTSGALGMIGLGGRKSRISPTAQFASAFGFRSKRFVLCFRNSDLGVLTFGDSPIESVFGTEISKYLLYTPLIASPSPSGAGYFINPKSIRIDGEKV SVNKDRTWLTKLSTTVPCTLTESWLYKIFAPTTLCIS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19120			Eukaryotic aspartyl protease f...		Lus10039217 [exp]	0	1
AT1G59960			NAD(P)-linked oxidoreductase s...		Lus10000671 [exp]	9.3	0.4780
AT2G01050			zinc ion binding;nucleic acid ...		Lus10032865 [exp]	11.1	0.4792
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10005194 [exp]	33.8	0.4374
					Lus10004853 [exp]	36.1	0.4374
					Lus10027667 [exp]	38.3	0.4374
					Lus10040407 [exp]	40.4	0.4374
AT5G51030			NAD(P)-binding Rossmann-fold s...		Lus10032524 [exp]	42.3	0.4374
					Lus10032828 [exp]	44.2	0.4374
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10033306 [exp]	46.0	0.4374
AT4G18340			Glycosyl hydrolase superfamily...		Lus10031034 [exp]	47.8	0.4374

Compare expression of checked genes

Lus10039217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.