Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52280 561 / 0 Myosin heavy chain-related protein (.1) AT1G63300 440 / 5e-139 Myosin heavy chain-related protein (.1) AT5G41140 404 / 5e-126 Myosin heavy chain-related protein (.1.2) AT1G22060 127 / 2e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027462 [exp] 1550 / 0 AT1G63300 612 / 0.0 Myosin heavy chain-related protein (.1) Lus10038860 [exp] 1029 / 0 AT1G63300 614 / 0.0 Myosin heavy chain-related protein (.1) Lus10014980 [exp] 932 / 0 AT1G63300 537 / 9e-179 Myosin heavy chain-related protein (.1) Lus10024517 [exp] 329 / 2e-97 AT5G41140 482 / 9e-154 Myosin heavy chain-related protein (.1.2) Lus10008012 [exp] 313 / 6e-92 AT5G41140 473 / 3e-150 Myosin heavy chain-related protein (.1.2) Lus10001481 [exp] 289 / 1e-82 AT5G41140 476 / 1e-150 Myosin heavy chain-related protein (.1.2) Lus10008482 [exp] 238 / 3e-65 AT1G63300 406 / 4e-124 Myosin heavy chain-related protein (.1) Lus10033461 [exp] 143 / 3e-34 AT1G22060 978 / 0.0 unknown protein Lus10020915 [exp] 129 / 6e-30 AT1G22060 985 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143800 [exp] 758 / 0 AT5G52280 594 / 0.0 Myosin heavy chain-related protein (.1) Potri.003G124600 [exp] 486 / 1e-155 AT1G63300 810 / 0.0 Myosin heavy chain-related protein (.1) Potri.012G141200 [exp] 408 / 1e-126 AT5G52280 322 / 7e-95 Myosin heavy chain-related protein (.1) Potri.001G106700 [exp] 345 / 3e-104 AT1G63300 603 / 0.0 Myosin heavy chain-related protein (.1) Potri.002G091700 [exp] 143 / 1e-34 AT1G22060 1546 / 0.0 unknown protein Potri.005G170066 [exp] 142 / 4e-34 AT1G22060 1031 / 0.0 unknown protein Potri.008G029800 [exp] 86 / 1e-16 AT1G22060 117 / 5e-26 unknown protein Potri.006G120400 [exp] 79 / 8e-15 AT1G22060 121 / 2e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039218 pacid=23175581 polypeptide=Lus10039218 locus=Lus10039218.g ID=Lus10039218.BGIv1.0 annot-version=v1.0 ATGTTCAAGTCATGGAGGAGCAAGGAGAAGAAGCTCAAAGCCGTGTTTCAGCTTCAGTTTCAAGCAACGGATGTGCCACAGTTGAAGAAGCCTGCTCTGA CTGTGTCATTAGTGCCGGAGGAAGTTGGGAAACCCACATTCAAGCTACAGAAAACTGCGGTTCAGGAGGGAACCTGCTTGTGGGAGAATCCTGTATATGT AACAGTGAAGCTAGTAAGGGAGCCCAAAACAGGGAAGATTCACGAGAAAATATATCATTTCATCGTCTCTAGTGGATCGTCCAAGAAAGATTACCTTGGA GAATGTTCAATTGATTTCGCAGATTTCGCGGATGAAGCTGAACCAATTACTGTCTCTCTGCCACTGAAGTTTGCAAATTCTGGAGCTGTTTTACATATTA CAATTCAGAAGATCCAAGGAGGAGTTGAACAACGATACAAGGGAAGTAATGAAGATTCTCGCGATGGAAGGTTAACAAACCAATTGAGCAATGATCGTTC AGAGGACTTGGATAATTATGAAGAAGATGACAACTTCAAAGCATTTATTGGCTCTACGGACAGCTTCAAGTCACTAGGGAGACAAAATTCCATGCCTCAG AGACCACCAATGGTTGTTAATTCAACAACAAAGAATCGCCTACACCGAAGAACTAGCACAGAGTGGTCAATAGGGTCAGCATCCGATGGGAGTTTAGTTG ATTCATCAAACAGCCCCGAGGAAGAATCAATTCAGAAGCTTAAGAGTGAAATTTTTAACCTAATGCGTCAGCAAGAGCTATCAGAAATGGAGACTCAGAC TCTTCGAAAACAACTAACCAAGGAGACCAAAAGAGCGCAAGATTTATCGAGGGAAGTTATGGACATCAAAGAAGATAGAGATGCACTTGAGAGAGAATGT GAACAGTTGAGGTTCTCAAGGAAGAATATAGAAGCAGAGGCTCTGGACCGATTACGAGCTGCGAATGAGGGGTCGCGGGTTAAGCTAGAAGAAATGAGGA AGGAGCTTAACCATGAAAAGGAGTTGAAGTTCAATCTTGAGTTGCAACTGCAGAAAACACAAGAATCAAACTCGCAGTTGATTCTAGCTGTGCAGGACCT TGATGATATGTTGAAGGAGAAAAATATAGAATCAAGTGAGGATGATAAACAATTCCAGTGCCAAAACTGCAGAAGTAGTACAGAAGCGAATGAAGGCCAT CAAGCAGCATCAGCAAACAGGAAATTAACTGGGGATGGAAGTGATGCCAATACCAATGAAGTAAACTTGCTTAAGGAACAGATAACTGATCTTTCTGATG AAATAGAGGCCTACAAAGAAAGCAGGGAAAGGCTGGAAAAGTACATAGAGCAACTCACACAAGATTATGAAGATTTGAAACAAGAAAACCAAGGCATCTC GTCTGGGTTAGAGCAGAATCGGCAGGAAACACTGGAAGAAGAAGGTGAATGCTCTAGATATCTGGCTGCAATTGAAGAATATGAATCACAGCTGGAGATG CTAGAGCAGAAACTAAGAGAACAGACACAAGAACAGTCAAAAGCATTGCTCCAGATCAATGAACTTGAAGGTCAAGTAAAATCATTGGAGCAGGAACTAC AGAATCAGGCAGAGGGATTTCATAAACATCTGGATGATATTACTCGGGCGAAATCTGAGGAGGAGCAAAGAGCGATTCGTGCGGAAGAGGCCTTGAGGAA GTCGCGATGGAAAAATGCCAGCACAGCAGAGCGACTTCAGGACGATTTTAGAAAGCTTTCACAAGAAATGGCTGGTAAAATTGACGAGAATGAGAAGCTT ATGGCTAATGCTGTCATGGAATCAGAAAAGCTCCTCGCAGAGAATGGACTCATGGCCGAAAAGCTTAACCAAGCTAATGAAGAGATTTCACTAATAAAAG ACCAAACTAAAGTAAGGACGGAAGAGCTATCGGCTCAACTTGATCTCAGGACAAAAATTATAGAAGATATATCATCAGAAGCAGAAGAGAAGTCAGTGCA GCTGGAAAATTTGCAGAAGCAAGAAAAAGAGAGGCAAGAAGCTTTCACAAGGGAAATCCAAATGCTGAAAGCCAGAATCGAGGAACTCACTGTAGCAGGC GCCTCCAGATGTGTAGAAGAACATGAAGACAAATCTAAGGATGAGCAGGATCAAGCAAATGTATCGCTTGCAAAAACAACACAGCAAAGAAATGAACTGG AGACAGAATATTCATCAGCGAAAAAAGAAGCAGGAAAAGCGGTACAAGAGTTAGAAAACTTGAGGTCACAGAAGGATGAAAGGGATATAATGCTCAATAG ACTGCAATTGGACATAATAGAGCTCAGAGATCAACACAAGAAGTTAACGCATAGTCTCTCAGAAGAAGAGTTGGAGAAAGAGAAACTGCAGAAGCAAATA CTTCAGTTAAAAGGGGAGCTACTGAAGAAGGAAGATGCTGCAGCTAATTGGGAAGTAAAGACATGCACAGAGCAAGAACTAGACAACTGCAATCTGAAAG AAATACTGAGCGAGATGGCGCAACTCAAGGAAAGGAACAAACGCATGGAAGGTGAATTGAAAGAAATGGAGGCGAGATATTCAGATATAAGCCTCAAGTT TGCAGAGGTGGAGGGAGAAAGGCAGCAGCTGGTTATGACTGTACGCAACCTGAAAAACAGTAAGAAGAACTAG
AA sequence Show only first row Show all	>Lus10039218 pacid=23175581 polypeptide=Lus10039218 locus=Lus10039218.g ID=Lus10039218.BGIv1.0 annot-version=v1.0 MFKSWRSKEKKLKAVFQLQFQATDVPQLKKPALTVSLVPEEVGKPTFKLQKTAVQEGTCLWENPVYVTVKLVREPKTGKIHEKIYHFIVSSGSSKKDYLG ECSIDFADFADEAEPITVSLPLKFANSGAVLHITIQKIQGGVEQRYKGSNEDSRDGRLTNQLSNDRSEDLDNYEEDDNFKAFIGSTDSFKSLGRQNSMPQ RPPMVVNSTTKNRLHRRTSTEWSIGSASDGSLVDSSNSPEEESIQKLKSEIFNLMRQQELSEMETQTLRKQLTKETKRAQDLSREVMDIKEDRDALEREC EQLRFSRKNIEAEALDRLRAANEGSRVKLEEMRKELNHEKELKFNLELQLQKTQESNSQLILAVQDLDDMLKEKNIESSEDDKQFQCQNCRSSTEANEGH QAASANRKLTGDGSDANTNEVNLLKEQITDLSDEIEAYKESRERLEKYIEQLTQDYEDLKQENQGISSGLEQNRQETLEEEGECSRYLAAIEEYESQLEM LEQKLREQTQEQSKALLQINELEGQVKSLEQELQNQAEGFHKHLDDITRAKSEEEQRAIRAEEALRKSRWKNASTAERLQDDFRKLSQEMAGKIDENEKL MANAVMESEKLLAENGLMAEKLNQANEEISLIKDQTKVRTEELSAQLDLRTKIIEDISSEAEEKSVQLENLQKQEKERQEAFTREIQMLKARIEELTVAG ASRCVEEHEDKSKDEQDQANVSLAKTTQQRNELETEYSSAKKEAGKAVQELENLRSQKDERDIMLNRLQLDIIELRDQHKKLTHSLSEEELEKEKLQKQI LQLKGELLKKEDAAANWEVKTCTEQELDNCNLKEILSEMAQLKERNKRMEGELKEMEARYSDISLKFAEVEGERQQLVMTVRNLKNSKKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52280			Myosin heavy chain-related pro...		Lus10039218 [exp]	0	1
AT1G63300			Myosin heavy chain-related pro...		Lus10027462 [exp]	1.0	0.9231
AT4G16444			unknown protein		Lus10035992 [exp]	10.5	0.8143
AT5G22580			Stress responsive A/B Barrel D...		Lus10020555 [exp]	10.6	0.8741
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10022533 [exp]	16.7	0.8496
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10001347 [exp]	18.2	0.8282
AT1G69880		ATH8	thioredoxin H-type 8 (.1)		Lus10037225 [exp]	19.9	0.8668
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10033405 [exp]	23.9	0.8668
AT1G52190			Major facilitator superfamily ...		Lus10025802 [exp]	26.2	0.8433
AT5G08350			GRAM domain-containing protein...		Lus10017372 [exp]	27.9	0.8304
AT3G47570			Leucine-rich repeat protein ki...		Lus10030630 [exp]	28.1	0.8475

Compare expression of checked genes

Lus10039218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.