Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16860 393 / 2e-138 GCIP-interacting family protein (.1) AT4G38560 43 / 0.0002 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027464 [exp] 541 / 0 AT2G16860 416 / 1e-147 GCIP-interacting family protein (.1) Lus10027466 [exp] 51 / 1e-08 AT2G16860 56 / 4e-11 GCIP-interacting family protein (.1) Lus10007582 [exp] 44 / 0.0001 AT4G35110 120 / 2e-29 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4) Lus10012164 [exp] 43 / 0.0002 AT2G16900 122 / 1e-30 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) Lus10026277 [exp] 41 / 0.001 AT4G35110 187 / 6e-55 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3), Arabidopsis phospholipase-like protein (PEARLI 4) family (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176200 [exp] 409 / 1e-144 AT2G16860 408 / 2e-144 GCIP-interacting family protein (.1) Potri.009G136400 [exp] 46 / 2e-05 AT2G16900 132 / 7e-35 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3) Potri.004G176100 [exp] 44 / 8e-05 AT2G16900 154 / 3e-42 Arabidopsis phospholipase-like protein (PEARLI 4) family (.1), Arabidopsis phospholipase-like protein (PEARLI 4) family (.2), Arabidopsis phospholipase-like protein (PEARLI 4) family (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08231 [flax] [poplar] SYF2 SYF2 splicing factor
Representative CDS sequence Show only first row Show all	>Lus10039220 pacid=23175601 polypeptide=Lus10039220 locus=Lus10039220.g ID=Lus10039220.BGIv1.0 annot-version=v1.0 ATGTCTGGGGCAAGGCCAGTTCATTCTGACTGCATAAATGCGTCGAATCCTTACCATCAGTGCGTTGAGTATTGCTTCAGGAAGATTGCAGAAGCCAAGG CTAGAGCAGATAAAGAAGCAGTATTCAAGCAGGCAGAAGCTGGTAATGCTCAGGCCAGTACACATTCTTCTCATGAGAAGAAGGATATGCCAGCTGAAAG ACCAGATTCTGATGATGATAGCCACAGTGACAAAAACGATCAAGTTGCAGAAGAAGTGCCAGAAGAAGATGATACTAAACTAAGTGGAAGGCAGATAAAA CTGCGCGAATTGAAGCGTAAGATGGACGCGGCAAAGAAAGCCAACCAAATGGCAATCAAAGCTGAAATGAAGAGACTGGAACCTCCTCAAGAATCAAGGG GCATCTCCAAACAAAAATGGCTTGAGGAGAGGAAGAAAAAGATTGGTAAACTGCTTGACGCAAATGACTTGGATATGAAGAGGGCATATATGCTAGACAC ACAAGAGGCAGCAGAGGTGAAATACAAGAAATGGGAGAAGGAGCCTGCTCCTGCTGGCTGGGATGTTTTCAACCAGAAGAGTCTGTATAATGCCTATAAA AAGCGGACGAAGAATGTGAATGTTGATTTGGAAGAGTACAACAAAATGAAAGAAGCCGATCCAGAGTTCTACCGCGATGCCTCGAGTCTCCAATATGGGA AGGCGCCAAAGACGTCAGAAGACAAGATTGACAGAATGGTGAAGGAACTCAAGGACCGGGACGAGAAGCGCAAGTCCTTCAGCCGGAGGAGGAAGTTCCA CGAGGAGAAAGATATTGACTCGATCAACGATCGTAACGAGCACTTCAACAAGAAGATCGAACGAGCCTTTGGCAAGTACACATTGGAGATCAAGAACAAT TTGGAGAGAGGAACTGCACTGCCTGACTAA
AA sequence Show only first row Show all	>Lus10039220 pacid=23175601 polypeptide=Lus10039220 locus=Lus10039220.g ID=Lus10039220.BGIv1.0 annot-version=v1.0 MSGARPVHSDCINASNPYHQCVEYCFRKIAEAKARADKEAVFKQAEAGNAQASTHSSHEKKDMPAERPDSDDDSHSDKNDQVAEEVPEEDDTKLSGRQIK LRELKRKMDAAKKANQMAIKAEMKRLEPPQESRGISKQKWLEERKKKIGKLLDANDLDMKRAYMLDTQEAAEVKYKKWEKEPAPAGWDVFNQKSLYNAYK KRTKNVNVDLEEYNKMKEADPEFYRDASSLQYGKAPKTSEDKIDRMVKELKDRDEKRKSFSRRRKFHEEKDIDSINDRNEHFNKKIERAFGKYTLEIKNN LERGTALPD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16860			GCIP-interacting family protei...		Lus10039220 [exp]	0	1
AT1G17130			Family of unknown function (DU...		Lus10005575 [exp]	1.7	0.9183
AT4G29490			Metallopeptidase M24 family pr...		Lus10008578 [exp]	3.5	0.9102
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Lus10005235 [exp]	6.0	0.9108
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10017686 [exp]	7.3	0.9135
AT1G12390			Cornichon family protein (.1)		Lus10006997 [exp]	8.8	0.8774
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Lus10023484 [exp]	8.9	0.8771
AT2G38450			unknown protein		Lus10001262 [exp]	9.2	0.9053
AT3G15660		ATGRX4	A. THALIANA GLUTAREDOXIN 4, gl...		Lus10008687 [exp]	9.3	0.8555
AT3G60360		EDA14, UTP11	U3 SMALL NUCLEOLAR RNA-ASSOCIA...		Lus10034210 [exp]	11.3	0.8904
AT4G18260			Cytochrome b561/ferric reducta...		Lus10028131 [exp]	11.9	0.8618

Compare expression of checked genes

Lus10039220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.