Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60050 451 / 5e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G55630 446 / 1e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G60040 176 / 2e-48 F-box family protein (.1) AT4G01400 149 / 3e-40 unknown protein AT1G05670 150 / 2e-39 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT3G22470 149 / 3e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 145 / 1e-37 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 144 / 1e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G11690 142 / 3e-37 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G48810 142 / 9e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027465 [exp] 783 / 0 AT1G55630 569 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014983 [exp] 548 / 0 AT3G60050 534 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038863 [exp] 525 / 0 AT3G60050 536 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009201 [exp] 147 / 1e-40 AT1G12700 274 / 3e-86 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10027914 [exp] 151 / 8e-40 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 150 / 9e-40 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10012068 [exp] 150 / 3e-39 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 147 / 2e-38 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002675 [exp] 146 / 2e-38 AT4G01400 570 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G144100 [exp] 449 / 5e-156 AT1G55630 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G141400 [exp] 355 / 1e-120 AT1G55630 391 / 7e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G257300 [exp] 157 / 2e-42 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G130600 [exp] 155 / 3e-42 AT1G12700 330 / 3e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 155 / 1e-41 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 156 / 2e-41 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 153 / 5e-41 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G032100 [exp] 152 / 5e-41 AT1G62930 451 / 2e-152 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242500 [exp] 151 / 3e-40 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046100 [exp] 151 / 4e-40 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10039221 pacid=23175542 polypeptide=Lus10039221 locus=Lus10039221.g ID=Lus10039221.BGIv1.0 annot-version=v1.0 ATGAACGTTGTAGCCCTGTTCGGTACAAGGTTGGTTCATAGAGTTCCATGTATAGTGGGAGTCACGAGGCGATTGTGTGACTATAGCCCCGATGATAATG CAATGGATAATGGGTTTCAGTTGATTGAAGAACCCATCAAGAGAACTTGGGGAGATTCACGGTCTGATTCAATGGATAGCCATGTTTGGTCCGAGAGGAG ACACCGAGAATGGGTGGATGCTGAACGTGTCATCGAAATTCTACGGCAAGATGGCCCTGGAATCGACACTAAAGCTGCGTTAACCGAGCTCCACATTTTC GCAGACTGTGACGAGTTCATGGCCATGTGGAGACTGGTCGAAGAGATGACCGACAACGGTTTCCCAACAACAGCACGAACGTTCAACATATTGATTTCCA CCTGTTGCGAGGCAGGTTTGGCTCGAAGGGTTGTAGATAGATTCGTTCAGTCAAAGACGTTTAATTTCAGGCCGTTCAAGCACTCTTACAATGCGATTCT CTACTCTCTTTTGGGAGTTCGTCACTATAGCTTGATCGAGTGGCTCTATCAGAAAATGTTAGTTAAGGGACTTTATCCGGACATCCTAACTTACAACGTT GTCATGTGTGCAAAGTACAGGTTGGGGGAGTTAGGCGACGTTTGGAAGTTAGTTGATGAGATGGTAAGAAACGGGTTTTCCCCCGATTTCCATACCTACA ACATCATTCTTCATGCTCTTGGTAAGGCAAACAAACCACTGGCGGCACATAAACTGATGAATCACATGAGAGAAGAGGGCATTCACCCTTGTGTTCTCCA CTACACCACACTGATGGATGGATTGAGTAAGGCTGGGAATTTGGAGGCTTGTGAAGGTTTCTTTGATGAAATGATGAAGAATGGATGTTTCCCGGATGTT GTTTGTTATACTGTAATGATCATGGGATATGTTGTGGCCGGGAAGCTTGAGAAGGCGAGGGCCATGTTTGAGGATATGATCACGAAAGGCCAGCTGCCAA ATGTGTTTACTTATAATTCGATGATTTGTGGGTATTGTATGGCGGGGAGGTATAAAGAGGCGTGTTGTATGCTTAAGGAGATGGAAGCCAAGGGTTGTAG CCCGAATTTTCTTGTGTATAGGAATTTAGTTGGGAATTTAAGGAATGCTGGGAAGGTTCATGAAGCTAATGATGTAATTAAGCAGATGGTCGAGGATGGG AAGTATGCCCATCTAGCTTCAAAGTTGATGGGACGACGGCGTAGAAGCTGA
AA sequence Show only first row Show all	>Lus10039221 pacid=23175542 polypeptide=Lus10039221 locus=Lus10039221.g ID=Lus10039221.BGIv1.0 annot-version=v1.0 MNVVALFGTRLVHRVPCIVGVTRRLCDYSPDDNAMDNGFQLIEEPIKRTWGDSRSDSMDSHVWSERRHREWVDAERVIEILRQDGPGIDTKAALTELHIF ADCDEFMAMWRLVEEMTDNGFPTTARTFNILISTCCEAGLARRVVDRFVQSKTFNFRPFKHSYNAILYSLLGVRHYSLIEWLYQKMLVKGLYPDILTYNV VMCAKYRLGELGDVWKLVDEMVRNGFSPDFHTYNIILHALGKANKPLAAHKLMNHMREEGIHPCVLHYTTLMDGLSKAGNLEACEGFFDEMMKNGCFPDV VCYTVMIMGYVVAGKLEKARAMFEDMITKGQLPNVFTYNSMICGYCMAGRYKEACCMLKEMEAKGCSPNFLVYRNLVGNLRNAGKVHEANDVIKQMVEDG KYAHLASKLMGRRRRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60050			Pentatricopeptide repeat (PPR)...		Lus10039221 [exp]	0	1
AT1G55630			Pentatricopeptide repeat (PPR)...		Lus10027465 [exp]	1.0	0.8348
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10026791 [exp]	7.9	0.6976
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Lus10038994 [exp]	10.1	0.7341
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10042529 [exp]	10.5	0.6895
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	16.4	0.7046
AT5G36930			Disease resistance protein (TI...		Lus10005373 [exp]	16.5	0.6710
AT1G73400			Pentatricopeptide repeat (PPR)...		Lus10019141 [exp]	23.1	0.6982
AT1G19290			Pentatricopeptide repeat (PPR)...		Lus10008185 [exp]	24.7	0.7206
AT5G10630			Translation elongation factor ...		Lus10020153 [exp]	27.7	0.6937
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10034086 [exp]	29.9	0.6551

Compare expression of checked genes

Lus10039221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.