Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47900 346 / 1e-116 Protein of unknown function (DUF1624) AT5G27730 311 / 2e-102 Protein of unknown function (DUF1624) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027468 [exp] 572 / 0 AT5G47900 380 / 9e-130 Protein of unknown function (DUF1624) Lus10019798 [exp] 450 / 4e-158 AT5G47900 329 / 5e-110 Protein of unknown function (DUF1624) Lus10014112 [exp] 390 / 7e-134 AT5G47900 237 / 4e-74 Protein of unknown function (DUF1624) Lus10010030 [exp] 355 / 1e-119 AT5G47900 433 / 2e-149 Protein of unknown function (DUF1624) Lus10020653 [exp] 305 / 9e-100 AT5G27730 624 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10021514 [exp] 300 / 4e-98 AT5G27730 540 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10022615 [exp] 293 / 2e-95 AT5G27730 532 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10000090 [exp] 256 / 2e-84 AT5G47900 174 / 5e-54 Protein of unknown function (DUF1624) Lus10036333 [exp] 239 / 9e-77 AT5G47900 269 / 6e-89 Protein of unknown function (DUF1624)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G176400 [exp] 490 / 1e-173 AT5G47900 400 / 2e-137 Protein of unknown function (DUF1624) Potri.009G136700 [exp] 486 / 5e-172 AT5G47900 395 / 2e-135 Protein of unknown function (DUF1624) Potri.001G071500 [exp] 365 / 7e-124 AT5G47900 519 / 0.0 Protein of unknown function (DUF1624) Potri.003G159200 [exp] 338 / 3e-113 AT5G47900 492 / 1e-172 Protein of unknown function (DUF1624) Potri.006G122500 [exp] 323 / 1e-106 AT5G27730 521 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.014G123800 [exp] 316 / 4e-104 AT5G47900 442 / 1e-152 Protein of unknown function (DUF1624) Potri.013G016900 [exp] 294 / 9e-96 AT5G27730 669 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.005G025200 [exp] 275 / 1e-88 AT5G27730 595 / 0.0 Protein of unknown function (DUF1624) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0316 [flax] [poplar] Acyl_transf_3 PF07786 [flax] [poplar] DUF1624 Protein of unknown function (DUF1624)
Representative CDS sequence Show only first row Show all	>Lus10039223 pacid=23175671 polypeptide=Lus10039223 locus=Lus10039223.g ID=Lus10039223.BGIv1.0 annot-version=v1.0 ATGGCAAAGGCAGCCGGCTATGGTCCGGTGCCCTTCGAAGACGAGATGCAGAAGAGCTTCCGGCCGCCTCTTCCGCCGCCGGACTTCAGCGGCAGAGAAG ACGGCCAGCTCCTCATGCTGTACAGGAAAAAGAACAAGCGGCTTGCCTCTCTTGATGCCTTCCGTGGCCTCTGTATCTTTCTAATGATGTTAGTTGATTA CGGGGGACACGTGTTCCCAACAATCGCTCACTCTGCATGGAACGGCATTCACTTGGCTGATTTCGTGATGCCGTTTTTCCTCTTCATCGTCGGCGTTTCA ATTGCCCTCGTTTACAAAAAAGCACCAAACAGAGTCGAAGCCACCAGGAAAGCTCTTCTCAAGTCTGTCAAATTGTTTCTGGTCGGCATCCTTCTTCAAG GTGGATTTTTCCATGGACTGCATTCATTGACATATGGTGTTGACATTGAAAGAATACGTCTGCTTGGAATTTTGCAGAGAATATCAATTGGCTACATTGT TGGGGCCATTTGTGAGATCTGGCTTTCAATTAGGAGAAAGGGAGATGTTGGCATCATCAAGAGCTATTATTGGCACTGGATTGCTGCATTAGCGATAGTT GCAGTTTACGCGAGGCTATCGTACGGCCTATACGTTCCAGATTGGCAGTTTTCATTACCTGGAGATCAACACCATGTCTTTACGGTGAAATGTTCAGTGA AGGGTGATGTTGGGCCAGCTTGCAACTCAGCTGGAATGATTGACCGTTATGTCCTTGGCCTCAGTCACCTATACGCAAAGCCTGTTTACAAGAACCTGAA GGTATGTAACATGTCTAGCAATAAGCAAGTCCCCGAGGATGCTCCTTCGTGGTGCCATGCTCCTTTCGACCCCGAAGGCCTTCTCAGCTCCTTAACGGCT GCAGTGACATGCATAATCGGCCTCCAATTCGGTCACGTTCTTGCTCACATACAGGATCACAAGGGGCGGTTGGAAAACTGGTCGGGTTTCTCGGTTTTTT TCCTCGTGCTCGGACTATTCCTCGTTCGTTTAGGGTTCCCGATCAACAAACCACTGTACTCAATAAGTTACATGTTGATAACCTCTGCTTCAGCAGGCAT TACATTTGCTGCACTCTACTTGCTGGTCTTCGTTTCAACTCCTAATAACCCCTGTAAAAAGTAA
AA sequence Show only first row Show all	>Lus10039223 pacid=23175671 polypeptide=Lus10039223 locus=Lus10039223.g ID=Lus10039223.BGIv1.0 annot-version=v1.0 MAKAAGYGPVPFEDEMQKSFRPPLPPPDFSGREDGQLLMLYRKKNKRLASLDAFRGLCIFLMMLVDYGGHVFPTIAHSAWNGIHLADFVMPFFLFIVGVS IALVYKKAPNRVEATRKALLKSVKLFLVGILLQGGFFHGLHSLTYGVDIERIRLLGILQRISIGYIVGAICEIWLSIRRKGDVGIIKSYYWHWIAALAIV AVYARLSYGLYVPDWQFSLPGDQHHVFTVKCSVKGDVGPACNSAGMIDRYVLGLSHLYAKPVYKNLKVCNMSSNKQVPEDAPSWCHAPFDPEGLLSSLTA AVTCIIGLQFGHVLAHIQDHKGRLENWSGFSVFFLVLGLFLVRLGFPINKPLYSISYMLITSASAGITFAALYLLVFVSTPNNPCKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47900			Protein of unknown function (D...		Lus10039223 [exp]	0	1
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10003888 [exp]	1.0	0.9558
AT1G49750			Leucine-rich repeat (LRR) fami...		Lus10019830 [exp]	2.0	0.9197
AT4G02100			Heat shock protein DnaJ with t...		Lus10036335 [exp]	5.5	0.8929
AT3G19300			Protein kinase superfamily pro...		Lus10019844 [exp]	9.0	0.8701
AT1G67750			Pectate lyase family protein (...		Lus10006456 [exp]	11.0	0.8445
AT5G41140			Myosin heavy chain-related pro...		Lus10024517 [exp]	13.4	0.8351
AT5G12250		TUB6	beta-6 tubulin (.1)		Lus10008528 [exp]	15.2	0.8728
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10001833 [exp]	15.6	0.8659
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10043287 [exp]	16.2	0.8517
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10028929 [exp]	16.4	0.8875

Compare expression of checked genes

Lus10039223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.