Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23850 551 / 0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G48980 531 / 0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45830 428 / 6e-147 DTA2 downstream target of AGL15 2 (.1.2) AT3G61270 422 / 7e-145 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G63420 424 / 1e-144 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61280 412 / 2e-140 Arabidopsis thaliana protein of unknown function (DUF821) (.1), Arabidopsis thaliana protein of unknown function (DUF821) (.2) AT3G61290 399 / 2e-136 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45840 390 / 6e-132 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G07220 356 / 6e-119 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039228 [exp] 530 / 0 AT5G23850 657 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027472 [exp] 452 / 7e-154 AT5G23850 439 / 4e-147 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10024519 [exp] 431 / 6e-148 AT1G63420 561 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027473 [exp] 400 / 8e-137 AT1G63420 531 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10037864 [exp] 369 / 5e-124 AT2G45830 520 / 0.0 downstream target of AGL15 2 (.1.2) Lus10037863 [exp] 368 / 3e-123 AT5G23850 446 / 3e-152 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10018239 [exp] 337 / 2e-111 AT1G07220 686 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10040665 [exp] 336 / 6e-111 AT1G07220 688 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10008017 [exp] 261 / 1e-83 AT5G23850 330 / 1e-109 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G144400 [exp] 568 / 0 AT5G23850 659 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.003G125000 [exp] 524 / 0 AT5G23850 603 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.014G081600 [exp] 452 / 2e-156 AT2G45830 613 / 0.0 downstream target of AGL15 2 (.1.2) Potri.002G157900 [exp] 428 / 1e-147 AT5G23850 537 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.002G157800 [exp] 426 / 1e-146 AT5G23850 513 / 5e-179 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G252000 [exp] 322 / 1e-105 AT1G07220 655 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF05686 [flax] [poplar] Glyco_transf_90 Glycosyl transferase family 90
Representative CDS sequence Show only first row Show all	>Lus10039226 pacid=23175549 polypeptide=Lus10039226 locus=Lus10039226.g ID=Lus10039226.BGIv1.0 annot-version=v1.0 ATGCAGCTCGCTCTTCAGAGATGGTGGCACGGATCTAGTCCTCACCGCCACTTGCTAATCGACACCATCCGCCGCCCGTTGATGAAGCTCCCTCCTAGAT CGTCTGCTGTCCTCTTCTCCCTCCTCTTCCTCGTCGGCGGCGCGTTCATCTCCACTCGCCTCCTCGACTCCAATGCATTTACAGTTTCCGGAGGAAACAA TATCTCGAAGTCTTCGCCGACGACTTCATTAACGGCCAACACGGTTCCCACTCACGAATTGCCGAAAAAGTCCCGGAGGAGAAGAATCGAGGTTCCACTC AACTGCACTGCACTCAACCACACCGGAACCTGCCCCACCAACTACTTGAAACTCCAGGGCGACGACGACGACGATGGCAGTGCCGGCATTGAATCGCCGC CGTCCATGTGTCCGGAGTACTTCCGATGGATCCACGAGGACCTCCGTCCATGGGCGAGGACGGGGATCACGAGGGAGACGCTGGAATCGGCGAAACGGAC GGCGAATTTCAAGCTGGTGATCGTCAACGGTAAGGCCTACGTGGAGAAGTATCAGAAGGCGTTTCAGACGAGGGATGTCTTCACCATTTGGGGGATTGTT CAGCTGCTCCGTAAGTACCCTGGTAAGGTGCCGGATTTGGAGCTGATGTTTGATTGTGTTGACTGGCCGGTCGTCAAATCGGTCGACTACGATAAGCCCA ACTCCACCGCGCCGCCGCCGCTGTTTCGGTACTGTGGGGATGATCAGACGCTCGACATCGTTTTCCCTGATTGGTCATTCTGGGGGTGGCCGGAGGTGAA CATAAAGCCATGGGAAGAGCTGCAGAGTGAGTTGAGAGAAGGAAATGGACGGACGAGATGGATGGACAGAGAGCCGTATGCATACTGGAAAGGGAATCCA ACGGTTGCAGAGACCAGAATGGACCTTATGAAGTGTAATTTATCCGATGAACACGACTGGAATGCTAGGGTCTTTGCTCAGGATTGGATTAAGGAATCAC AGCAAGGGTACAAGCAATCAGATTTAGCCAGCCAGTGTGTTCATAGGTACAAGATCTACATCGAAGGGTCAGCATGGTCAGTGAGCCAGAAGTACATTAT GGCCTGCGATTCGGTTACCCTGCTAGTAAAGCCTCATTACTATGACTTCTTCACTAGAAGCTTGGTTCCAGTTCATCACTACTGGCCTATACAAGAGCAC GACAAGTGCAAGTCGATCAAGTTCGCTGTCGACTGGGGCAACAGCCATAAGCACAAGGCGCAAGAGATCGGGAAGGCAGCGAGTTCGTTCATTCAGCAGT AA
AA sequence Show only first row Show all	>Lus10039226 pacid=23175549 polypeptide=Lus10039226 locus=Lus10039226.g ID=Lus10039226.BGIv1.0 annot-version=v1.0 MQLALQRWWHGSSPHRHLLIDTIRRPLMKLPPRSSAVLFSLLFLVGGAFISTRLLDSNAFTVSGGNNISKSSPTTSLTANTVPTHELPKKSRRRRIEVPL NCTALNHTGTCPTNYLKLQGDDDDDGSAGIESPPSMCPEYFRWIHEDLRPWARTGITRETLESAKRTANFKLVIVNGKAYVEKYQKAFQTRDVFTIWGIV QLLRKYPGKVPDLELMFDCVDWPVVKSVDYDKPNSTAPPPLFRYCGDDQTLDIVFPDWSFWGWPEVNIKPWEELQSELREGNGRTRWMDREPYAYWKGNP TVAETRMDLMKCNLSDEHDWNARVFAQDWIKESQQGYKQSDLASQCVHRYKIYIEGSAWSVSQKYIMACDSVTLLVKPHYYDFFTRSLVPVHHYWPIQEH DKCKSIKFAVDWGNSHKHKAQEIGKAASSFIQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23850			Arabidopsis thaliana protein o...		Lus10039226 [exp]	0	1
AT5G23850			Arabidopsis thaliana protein o...		Lus10027472 [exp]	2.4	0.8607
AT3G48980			Arabidopsis thaliana protein o...		Lus10039227 [exp]	4.9	0.8510
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10040519 [exp]	8.1	0.8581
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10021154 [exp]	8.9	0.8415
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011590 [exp]	10.6	0.8374
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10035866 [exp]	17.7	0.8485
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Lus10043029 [exp]	23.4	0.8128
AT2G42910			Phosphoribosyltransferase fami...		Lus10010935 [exp]	25.7	0.8272
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Lus10029221 [exp]	26.2	0.8197
AT1G70730		PGM2	phosphoglucomutase 2, Phosphog...		Lus10034595 [exp]	26.5	0.8375

Compare expression of checked genes

Lus10039226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.