Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23850 612 / 0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G48980 610 / 0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45830 481 / 3e-166 DTA2 downstream target of AGL15 2 (.1.2) AT1G63420 480 / 2e-165 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61270 469 / 4e-162 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT3G61280 451 / 2e-154 Arabidopsis thaliana protein of unknown function (DUF821) (.1), Arabidopsis thaliana protein of unknown function (DUF821) (.2) AT3G61290 430 / 2e-147 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT2G45840 432 / 4e-147 Arabidopsis thaliana protein of unknown function (DUF821) (.1) AT1G07220 395 / 7e-133 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027473 [exp] 763 / 0 AT1G63420 531 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10039226 [exp] 546 / 0 AT5G23850 563 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10024519 [exp] 471 / 4e-162 AT1G63420 561 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10037864 [exp] 421 / 4e-143 AT2G45830 520 / 0.0 downstream target of AGL15 2 (.1.2) Lus10037863 [exp] 418 / 1e-141 AT5G23850 446 / 3e-152 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10027472 [exp] 394 / 6e-130 AT5G23850 439 / 4e-147 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10018239 [exp] 380 / 5e-127 AT1G07220 686 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10040665 [exp] 377 / 8e-126 AT1G07220 688 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Lus10008017 [exp] 309 / 2e-101 AT5G23850 330 / 1e-109 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G144400 [exp] 628 / 0 AT5G23850 659 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.003G125000 [exp] 575 / 0 AT5G23850 603 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.014G081600 [exp] 520 / 0 AT2G45830 613 / 0.0 downstream target of AGL15 2 (.1.2) Potri.002G157900 [exp] 476 / 7e-165 AT5G23850 537 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.002G157800 [exp] 469 / 4e-162 AT5G23850 513 / 5e-179 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G252000 [exp] 365 / 2e-121 AT1G07220 655 / 0.0 Arabidopsis thaliana protein of unknown function (DUF821) (.1) Potri.001G106500 [exp] 88 / 7e-21 AT3G48980 85 / 1e-20 Arabidopsis thaliana protein of unknown function (DUF821) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF05686 [flax] [poplar] Glyco_transf_90 Glycosyl transferase family 90
Representative CDS sequence Show only first row Show all	>Lus10039228 pacid=23175701 polypeptide=Lus10039228 locus=Lus10039228.g ID=Lus10039228.BGIv1.0 annot-version=v1.0 ATGAGGGATAGCAATGCACAACCGCAGCTGGCGCATCTCCCGATGCCGATTGCTAAAAACTCTACCTTAATCTTCCTCGCCATTTTCCTCCTCGTCGGCG CGTACGTTTCCACGCGCCTCTTCTCCGATGAAATTCCGATTCAAACGGAAGAGAGAGAAATTAAAAAGAACACAGAAACCGCCACGTGGCAGGAATATAG AGTCGAGGTTCCACTGGACTGCCCTGGGTACACAACCACTGGAGTATGCCCTACTAACTACCCGCCGACTTTTTTCCCTCCTACCGACAACCATCCTCCG CCGTCGACCTGTCCGGAGTACTTCCGTTTAATCCACGAGGACCTCCGGCCATGGTCCCACACGGGGATCACGAGGGAGACGCTGGAGAGAGCCAAAACGA CGGCGAATTTCAGGCTGGTCATAGTGAATGGACGAGCCTACGTGGAGACTTTCGAGAAAGGGTTCCAGACGAGGGACACTTTTACCCTGTGGGGGTTCCT ACAGTTGCTCCGTAGGTACCCGGGTCAGCTCCCAGATTTGGAGCTGATGTTTGACTGCGTCGATTGGCCGGTCGTCAGAACAGAGAACTACACCGCGCCG GATGCTCCTCCACCGCCGCCCCTGTTCCGCTACTGCGGCGATAATCAGACCCTCGACATTGTTTTCCCCGATTGGTCCTTTTGGGGATGGGCGGAGATAA ACATTAAGCCATGGGAAATGCTGTTGGGGGAGCTGAAGGAAGGAAATACGAGAACCAAATGGGAAGATAGGGCGCCCTATGCTTACTGGAAAGGAAACCC TGACGTTGCAGAGACAAGGCTGGACCTTTTGAAATGCAACGTCTCCGAAACCGGTCAGGATTGGAATGCTCGAGTCTATAGACAGGATTGGTTCAAAGAA TCCCAGCAGGGTTACAAGCAATCTGATCTAGCAAGCCAATGCATTCACAGGTACAAGATTTACATAGAAGGGTCAGCGTGGTCGGTGAGCCAGAAGTATA TTCTGGCTTGTGACTCTGTTACGCTGATCGTGACTCCACATTACTATGACTTCTTCACCAGAGGGTTGATGCCGGTGAGGCATTTTTGGCCTGTTAAGGA AGATGATAAGTGCAAGTCTATCAAGTTTGCTGTCGATTGGGGGAATAGCCACAAGAGAAAGGCGCAAAACATAGGAAGAGCAGCGAGCAACTTCATCCAG AACGACATGAAGATGGACAACGTGTACGACTACATGTTCCACTTACTCAACGAGTATGCGAAGCTGCTCAAGTTCACGCCGGAGGTGCCCAAGAACGCGA CCGAGCTCTGTTCGGAGAGCATGGCGTGTAGCGCTCCGGCCGAAGGGTTTCAGAAGCAGTTCATGATGGATTCACTGGTGAAGTACCCATCCGAAACGCC TCCTTGCGGCATGCCTCCTCCTTACGACCCGGGGACAATGTACGGCGTGCTGAAGAAGAGGGACACTGCTATGAAGATTGTTGATCTCTTGGAGAGGACT TACTGGGGGAAGCAGAAACAGAGTGATGCTCAAACTCGGCCTTGA
AA sequence Show only first row Show all	>Lus10039228 pacid=23175701 polypeptide=Lus10039228 locus=Lus10039228.g ID=Lus10039228.BGIv1.0 annot-version=v1.0 MRDSNAQPQLAHLPMPIAKNSTLIFLAIFLLVGAYVSTRLFSDEIPIQTEEREIKKNTETATWQEYRVEVPLDCPGYTTTGVCPTNYPPTFFPPTDNHPP PSTCPEYFRLIHEDLRPWSHTGITRETLERAKTTANFRLVIVNGRAYVETFEKGFQTRDTFTLWGFLQLLRRYPGQLPDLELMFDCVDWPVVRTENYTAP DAPPPPPLFRYCGDNQTLDIVFPDWSFWGWAEINIKPWEMLLGELKEGNTRTKWEDRAPYAYWKGNPDVAETRLDLLKCNVSETGQDWNARVYRQDWFKE SQQGYKQSDLASQCIHRYKIYIEGSAWSVSQKYILACDSVTLIVTPHYYDFFTRGLMPVRHFWPVKEDDKCKSIKFAVDWGNSHKRKAQNIGRAASNFIQ NDMKMDNVYDYMFHLLNEYAKLLKFTPEVPKNATELCSESMACSAPAEGFQKQFMMDSLVKYPSETPPCGMPPPYDPGTMYGVLKKRDTAMKIVDLLERT YWGKQKQSDAQTRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23850			Arabidopsis thaliana protein o...		Lus10039228 [exp]	0	1
AT3G54500			unknown protein		Lus10024170 [exp]	4.9	0.6642
AT4G38960	CO		B-box type zinc finger family ...		Lus10031087 [exp]	9.5	0.6450
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Lus10037636 [exp]	9.6	0.6522
AT3G12320			unknown protein		Lus10024129 [exp]	12.8	0.6417
AT3G12320			unknown protein		Lus10005384 [exp]	18.2	0.6229
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10042292 [exp]	21.0	0.6355
AT4G03260			Outer arm dynein light chain 1...		Lus10039729 [exp]	25.1	0.6242
AT5G59480			Haloacid dehalogenase-like hyd...		Lus10040786 [exp]	31.1	0.6141
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10026365 [exp]	32.5	0.5827
AT3G54500			unknown protein		Lus10039553 [exp]	36.3	0.5867

Compare expression of checked genes

Lus10039228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.