Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52380 260 / 4e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) AT4G36020 66 / 3e-12 CSDP1 cold shock domain protein 1 (.1) AT3G43590 64 / 1e-11 zinc knuckle (CCHC-type) family protein (.1) AT2G12880 47 / 1e-06 Zinc knuckle (CCHC-type) family protein (.1) AT2G17870 49 / 2e-06 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) AT3G42860 48 / 2e-06 zinc knuckle (CCHC-type) family protein (.1) AT5G36240 42 / 0.0002 zinc knuckle (CCHC-type) family protein (.1) AT5G20220 42 / 0.0004 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) AT1G75560 41 / 0.0004 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027475 [exp] 446 / 2e-160 AT5G52380 261 / 1e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Lus10008437 [exp] 62 / 2e-10 AT3G43590 264 / 4e-80 zinc knuckle (CCHC-type) family protein (.1) Lus10013378 [exp] 62 / 2e-10 AT3G43590 256 / 1e-74 zinc knuckle (CCHC-type) family protein (.1) Lus10041902 [exp] 55 / 9e-09 AT4G36020 159 / 2e-47 cold shock domain protein 1 (.1) Lus10028449 [exp] 50 / 4e-07 AT4G36020 158 / 3e-47 cold shock domain protein 1 (.1) Lus10016232 [exp] 50 / 9e-07 AT3G43590 139 / 6e-37 zinc knuckle (CCHC-type) family protein (.1) Lus10029311 [exp] 48 / 3e-06 AT3G43590 139 / 2e-37 zinc knuckle (CCHC-type) family protein (.1) Lus10036722 [exp] 47 / 9e-06 AT5G20220 322 / 3e-108 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G141700 [exp] 317 / 2e-109 AT5G52380 250 / 6e-83 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Potri.015G144600 [exp] 317 / 3e-109 AT5G52380 261 / 2e-87 VASCULAR-RELATED NAC-DOMAIN 6 (.1) Potri.016G063800 [exp] 66 / 2e-12 AT3G43590 141 / 2e-38 zinc knuckle (CCHC-type) family protein (.1) Potri.004G193500 [exp] 66 / 5e-12 AT3G43590 299 / 3e-93 zinc knuckle (CCHC-type) family protein (.1) Potri.009G155500 [exp] 66 / 5e-12 AT3G43590 286 / 9e-89 zinc knuckle (CCHC-type) family protein (.1) Potri.007G057100 [exp] 52 / 9e-08 AT4G36020 127 / 3e-35 cold shock domain protein 1 (.1) Potri.005G234700 [exp] 52 / 1e-07 AT1G75560 278 / 2e-94 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2) Potri.005G112800 [exp] 51 / 2e-07 AT2G17870 86 / 1e-19 ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 (.1) Potri.004G161800 [exp] 49 / 1e-06 AT1G75560 273 / 2e-92 zinc knuckle (CCHC-type) family protein (.1), zinc knuckle (CCHC-type) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle
Representative CDS sequence Show only first row Show all	>Lus10039230 pacid=23175709 polypeptide=Lus10039230 locus=Lus10039230.g ID=Lus10039230.BGIv1.0 annot-version=v1.0 ATGGTGAGCCAGAGGCAGAAACTGGCACGGAAGAAATTCAAAGCAGAGAACCCAGCTCTGTTCCCAAAGCCAGAGCCGACGGCCCCCAAGGATCCCAACA AGCCTAAGAAGAACAAAAAGAAGAGCACTTTCAAGCGCAAGAAGCCCGAATCCAATGACCCCAGAAAGACCAAGTTCACCAAACGACCCCTTAGAGTTCC TGGGATGAAGCCTGGGGACAGCTGTTACATATGCAAGGCTGTAGACCATATCGCCAAGCTTTGCCCCCAGAAAGCTGAATGGGAAAGGGACAAGATATGC TTGCTGTGTAGACAAAGGGGACATAGCTTGAAGCGTTGCCCCAATAAGAGAGATGGAGATGAGAGTGTTGGTGCTAAGTTGTGTTATAACTGTGGGGAGA CTGGTCATTCTTTGGCTAATTGTTCTCAGCCAATTCAAGATGGAGGAACCAAGTACGCCAGTTGTTTTGTCTGCAATGAACAAGGTCATTTGAGCAAGGA TTGCCCGAAAAATGCCAACGGTATATACCCAAAGGGTGGCTCTTGCAAAATATGTGGTGGTGTGACACATTTGGCTAGAGACTGTCCCGATAAGGCTAAA AGATTCCCTACTTCGTATGATCGGAAAGCATTTGGAATTGGTGAGAAGTCGACTGGGAAGGTGACGAAGTTCATTAGCGGGGACGAGCTTGTAGACGATT TTATGGCAGATATCGAGCAGACAGGCAAGCCTTCTGATCTGAAGGAAGTGGCAACTGTTCCGATGAAGAAAAAAGAGCCGAAAGTAGTGAACTTTGTAGG ATAG
AA sequence Show only first row Show all	>Lus10039230 pacid=23175709 polypeptide=Lus10039230 locus=Lus10039230.g ID=Lus10039230.BGIv1.0 annot-version=v1.0 MVSQRQKLARKKFKAENPALFPKPEPTAPKDPNKPKKNKKKSTFKRKKPESNDPRKTKFTKRPLRVPGMKPGDSCYICKAVDHIAKLCPQKAEWERDKIC LLCRQRGHSLKRCPNKRDGDESVGAKLCYNCGETGHSLANCSQPIQDGGTKYASCFVCNEQGHLSKDCPKNANGIYPKGGSCKICGGVTHLARDCPDKAK RFPTSYDRKAFGIGEKSTGKVTKFISGDELVDDFMADIEQTGKPSDLKEVATVPMKKKEPKVVNFVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52380			VASCULAR-RELATED NAC-DOMAIN 6 ...		Lus10039230 [exp]	0	1
AT5G52380			VASCULAR-RELATED NAC-DOMAIN 6 ...		Lus10027475 [exp]	4.5	0.8237
AT2G42710			Ribosomal protein L1p/L10e fam...		Lus10036988 [exp]	6.5	0.8168
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10003667 [exp]	7.1	0.8296
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10024632 [exp]	8.1	0.8357
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Lus10022992 [exp]	10.4	0.7758
AT5G27395			Mitochondrial inner membrane t...		Lus10029978 [exp]	12.0	0.7988
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10032268 [exp]	15.6	0.8299
AT3G18600			P-loop containing nucleoside t...		Lus10038950 [exp]	16.1	0.8225
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10023758 [exp]	17.3	0.7881
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10020542 [exp]	18.8	0.8233

Compare expression of checked genes

Lus10039230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.