Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48990 779 / 0 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 188 / 4e-53 AMP-dependent synthetase and ligase family protein (.1) AT3G16170 181 / 2e-50 AAE13 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) AT1G20510 172 / 5e-47 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT3G21240 166 / 4e-45 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G20480 166 / 6e-45 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 165 / 1e-44 AMP-dependent synthetase and ligase family protein (.1) AT3G21230 165 / 2e-44 4CL5 4-coumarate:CoA ligase 5 (.1) AT1G65060 162 / 3e-43 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT1G20500 160 / 7e-43 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027478 [exp] 494 / 2e-174 AT3G48990 440 / 1e-153 AMP-dependent synthetase and ligase family protein (.1) Lus10027477 [exp] 399 / 3e-139 AT3G48990 355 / 2e-122 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 185 / 9e-52 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 183 / 4e-51 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 174 / 6e-48 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10021431 [exp] 173 / 2e-47 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 166 / 1e-44 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10026143 [exp] 164 / 3e-44 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10012280 [exp] 165 / 1e-43 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G144700 [exp] 792 / 0 AT3G48990 776 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G105900 [exp] 714 / 0 AT3G48990 750 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G102000 [exp] 181 / 2e-50 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.001G185500 [exp] 179 / 2e-49 AT3G16170 705 / 0.0 acyl activating enzyme 13, AMP-dependent synthetase and ligase family protein (.1) Potri.017G112800 [exp] 178 / 2e-49 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.010G230200 [exp] 177 / 1e-48 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.006G169700 [exp] 175 / 3e-48 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.005G248500 [exp] 174 / 5e-48 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.018G094200 [exp] 172 / 4e-47 AT3G21240 807 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.012G095000 [exp] 167 / 2e-45 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10039232 pacid=23175543 polypeptide=Lus10039232 locus=Lus10039232.g ID=Lus10039232.BGIv1.0 annot-version=v1.0 ATGGAGACGACTCAAACTCTCACTGGATTGCTCAAACGCGTCGCCGGCGAGTTCCCCGACCGCCGAGCACTCTCTGTCTCCGGAAAGTTCGATCTAACTC ACGCTCGCCTCGATGAACTTGTCGAACGCGCCGCTTCTCGCCTCGTCTCCGCCGGCATCAAGCCCGGGGACGTCGTCGCCCTCACGTTCCCCAACACTGT CGAGTTCGTGGTGATGTTTTTGGCTGTGATTCGAGCCAGAGCCACCGCAGCTCCGCTCAACGCCGCCTACACGGCGGAGGAATTCGAGTTCTACCTATCT GACTCAGAATCGAAGCTACTGCTTACTTCGCGATCGAAGCTATTGGTTACTTCGCGAGAAGGAAACGCGGCAGCGGAAGCCGCTGCTTCCAAGCTACAAG TTACTCAAGTCACCGCCGGTCTTACCGGCGAAGACTCAGAACTCATCCTCTCTCTTTCTCCGTCCGAGACGGGAGATAACTCGATAACTCAGCTGGTGAA TGATCCGTCTGACGTGGCACTCTTCCTTCACACCTCTGGAACCACCAGCAGGCCCAAGGGAGTTCCATTGACTCAGCTCAATTTGGCCTCATCGGTACAG AACATTAAGTCAGTGTACAAGCTCACAGAGTCAGATTCGACCGTGATTGTCCTGCCATTGTTTCATGTACATGGATTGTTAGCAGGGTTATTGAGTTCAT TTGTTGCTGGAGCTGCTGTGACACTGCCAGCTTCTGGTCGATTCTCGGCTTCATCATTTTGGCAGGACATGCTGAAGTACAATGCTACTTGGTACACAGC AGTTCCCACCATCCACCAAATCATACTAGACCGCCATGGAAGTAGCCCAGAGCCTGTTTACCCGAAGCTTCGATTCATTCGTAGCTGCAGCGCTTCACTT GCCCCGTCGATATTGGCTAGGCTCGAGGAGGCATTTGGGGCACCGGTTCTGGAGGCCTATGCAATGACGGAGGCAACCCATTTGATGTCGTCGAACCCAT TGCCCGAAGACGGTCCACATAAACCCGGGTCGGTTGGGAAACCAGTTGGTCAAGAGATGGCGATCCTGGATGAAAGTGGCGCGATTCAGGGCCCCGATTC CAAAGGTGAAGTCTGCATTAGGGGTCCAAATGTGACCAAGGGATACAAGAACAACCCTGATGCTAACAAGGCAGGATTCCTATTCGGGTGGTTTCATACC GGAGATATCGGTTATTTCGACTCAGATGGTTATTTAAATCTTGTGGGCAGGATTAAGGAGCTTATCAACCGTGGAGGGGAGAAGATATCGCCAATAGAAG TGGATGCTGTTCTCCTATCGCATCCAGACATTGCTCAAGCTGTATGTTTCGGAGTCCCCGATGATAAATACGGCGAAGAGATAAACTGTGCTATAATACC GAGGGAAGGATCTAAGATCGACGAGGCAGAGGTGCAGAGCTTCTGCAAGAAGAACCTGGCCGCATTCAAGGTCCCGAAGAAGGTGTTCATCACGAACGAT GTTCCGAAGACGGCCAGCGGTAAGATCCAGAGGAGAATTGTGGCTCAGCACTTCATCTCTTGA
AA sequence Show only first row Show all	>Lus10039232 pacid=23175543 polypeptide=Lus10039232 locus=Lus10039232.g ID=Lus10039232.BGIv1.0 annot-version=v1.0 METTQTLTGLLKRVAGEFPDRRALSVSGKFDLTHARLDELVERAASRLVSAGIKPGDVVALTFPNTVEFVVMFLAVIRARATAAPLNAAYTAEEFEFYLS DSESKLLLTSRSKLLVTSREGNAAAEAAASKLQVTQVTAGLTGEDSELILSLSPSETGDNSITQLVNDPSDVALFLHTSGTTSRPKGVPLTQLNLASSVQ NIKSVYKLTESDSTVIVLPLFHVHGLLAGLLSSFVAGAAVTLPASGRFSASSFWQDMLKYNATWYTAVPTIHQIILDRHGSSPEPVYPKLRFIRSCSASL APSILARLEEAFGAPVLEAYAMTEATHLMSSNPLPEDGPHKPGSVGKPVGQEMAILDESGAIQGPDSKGEVCIRGPNVTKGYKNNPDANKAGFLFGWFHT GDIGYFDSDGYLNLVGRIKELINRGGEKISPIEVDAVLLSHPDIAQAVCFGVPDDKYGEEINCAIIPREGSKIDEAEVQSFCKKNLAAFKVPKKVFITND VPKTASGKIQRRIVAQHFIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48990			AMP-dependent synthetase and l...		Lus10039232 [exp]	0	1
AT3G21690			MATE efflux family protein (.1...		Lus10027169 [exp]	6.6	0.8850
AT2G37470			Histone superfamily protein (....		Lus10023753 [exp]	14.1	0.8836
AT1G11050			Protein kinase superfamily pro...		Lus10028549 [exp]	18.4	0.8892
AT2G33420			Protein of unknown function (D...		Lus10011785 [exp]	29.8	0.8799
AT3G47670			Plant invertase/pectin methyle...		Lus10008625 [exp]	31.8	0.8605
AT1G49820		MTK1, ATMTK	5-methylthioribose kinase 1, S...		Lus10002806 [exp]	31.9	0.8750
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041831 [exp]	35.5	0.8676
AT1G77100			Peroxidase superfamily protein...		Lus10028631 [exp]	44.4	0.8374
AT5G06730			Peroxidase superfamily protein...		Lus10027984 [exp]	45.9	0.8790
AT5G28470			Major facilitator superfamily ...		Lus10042182 [exp]	72.7	0.8395

Compare expression of checked genes

Lus10039232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.