Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16260 242 / 6e-78 Glycosyl hydrolase superfamily protein (.1) AT5G20390 238 / 2e-76 Glycosyl hydrolase superfamily protein (.1) AT3G57260 236 / 1e-75 AtPR2, PR-2, PR2, BG2, BGL2 PATHOGENESIS-RELATED PROTEIN 2, "beta-1,3-glucanase 2", beta-1,3-glucanase 2 (.1) AT3G57270 235 / 3e-75 BG1 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) AT5G20340 232 / 9e-74 BG5 beta-1,3-glucanase 5 (.1) AT5G20330 231 / 2e-73 BETAG4 "beta-1,3-glucanase 4", beta-1,3-glucanase 4 (.1) AT4G26830 224 / 2e-69 O-Glycosyl hydrolases family 17 protein (.1) AT1G33220 219 / 7e-69 Glycosyl hydrolase superfamily protein (.1) AT3G57240 219 / 9e-69 BG3 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) AT5G56590 216 / 4e-66 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027479 [exp] 474 / 2e-170 AT4G16260 216 / 8e-69 Glycosyl hydrolase superfamily protein (.1) Lus10014110 [exp] 223 / 1e-70 AT3G57270 359 / 2e-124 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10010091 [exp] 229 / 2e-69 AT1G02305 520 / 0.0 Cysteine proteinases superfamily protein (.1) Lus10031037 [exp] 221 / 3e-69 AT3G57240 312 / 3e-105 "beta-1,3-glucanase 3", beta-1,3-glucanase 3 (.1) Lus10016883 [exp] 216 / 5e-68 AT4G16260 391 / 1e-136 Glycosyl hydrolase superfamily protein (.1) Lus10011482 [exp] 214 / 9e-66 AT3G15800 540 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10040600 [exp] 214 / 1e-65 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10032562 [exp] 213 / 2e-65 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10028122 [exp] 212 / 2e-65 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G255100 [exp] 256 / 2e-83 AT4G16260 369 / 9e-128 Glycosyl hydrolase superfamily protein (.1) Potri.002G089200 [exp] 250 / 4e-81 AT1G77780 309 / 6e-104 Glycosyl hydrolase superfamily protein (.1) Potri.005G172000 [exp] 242 / 2e-77 AT1G77780 338 / 6e-115 Glycosyl hydrolase superfamily protein (.1) Potri.010G142800 [exp] 223 / 3e-70 AT4G16260 433 / 2e-152 Glycosyl hydrolase superfamily protein (.1) Potri.010G143166 [exp] 221 / 7e-70 AT4G16260 432 / 5e-153 Glycosyl hydrolase superfamily protein (.1) Potri.006G046100 [exp] 221 / 2e-69 AT3G57270 370 / 4e-128 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.016G057600 [exp] 221 / 2e-69 AT3G57270 414 / 2e-145 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.009G050300 [exp] 219 / 3e-69 AT4G16260 285 / 5e-95 Glycosyl hydrolase superfamily protein (.1) Potri.016G057400 [exp] 220 / 4e-69 AT3G57270 416 / 4e-146 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Potri.006G048100 [exp] 218 / 2e-68 AT3G57270 382 / 6e-133 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10039233 pacid=23175704 polypeptide=Lus10039233 locus=Lus10039233.g ID=Lus10039233.BGIv1.0 annot-version=v1.0 ATGACTATATCTCGTTTTGTTTTCCTTCTTTCCATTGCCGTAAATTTGTTCTTGCTTCATGTCGGAGAAGCTACTCGTGTTGGTGTCAACTATGGTCGAG TAGGAGACAACCTTGCTTCACCGAACCTTGTCGTATCCTTAATTAAATCAAGGAATATAACCCGGGTCCGGATTTTTGACCCGGACCATGGGGTATTGGC TGCTTTGGCAAAAGCCGGCGGCATGGAAGTGGTCCTCGGCACGGTGAACTCCGATCTTGAACAGTTGGCGACCAACCCGTCATTCGCGGCACAATGGGTC TCCGCCAACGTGGTCCCCTACCACCCGGCTCTAAAATTCCGCTACGTGGCAGCCGGTAACGAGGTCATACCGGGCCCACTCGCGCAGCACGTGCTCGGAG CGATTGAAAATCTCGATAACGCCCTAAAATCCGCCGGAATCGACAACGTCCACGTAAGCACGGCGCTTAGTTTCGCCTCGATCGGAGAATCGTTTCCACC GTCGGCAGGGGAATTCGACGACGAATCGAAGCCGTTCATGGCTCCGATCATTGAGTTCTTGGCGAAGAACGATTACCCGCTGCTTGTAAACGTGTACCCA TACTTCGCCTACAAGAGCAACTCCGATCGTATAGATCTGAACTACGCGCTGGGAAACCCCGGCAGAAGTTTCGTCGCCGACGGGAGGTTGAGGTACCGGT GCTTGTTCGACTCTATGGTGGACGTGATGTACGCGGCGGCGGAGAAGGTCAACGGGAGGAAGGTTAGGATGGTTGTTACGGAGACAGGGTGGCCAAGCGC CGGCGACAAAGTGGCGACGATGGAGAATGCGGAGGCGTACGTCAACAACGCGGCGGCGAAGGCCGGTGGTTCCGATGCCGGAACGCCGAGGCGGCCCGGG ATCGAAACGGAGACTTACTTGTTTGCTCTGTTTAACGAGGATCTGAAGCCGGAAGGTGAAGAAAGGAATTTCGGGATGTATTGGCCGGACTTTACGGAGG TTTACCATGTTGATTTCCCCAGTAATTTAATTAATTAG
AA sequence Show only first row Show all	>Lus10039233 pacid=23175704 polypeptide=Lus10039233 locus=Lus10039233.g ID=Lus10039233.BGIv1.0 annot-version=v1.0 MTISRFVFLLSIAVNLFLLHVGEATRVGVNYGRVGDNLASPNLVVSLIKSRNITRVRIFDPDHGVLAALAKAGGMEVVLGTVNSDLEQLATNPSFAAQWV SANVVPYHPALKFRYVAAGNEVIPGPLAQHVLGAIENLDNALKSAGIDNVHVSTALSFASIGESFPPSAGEFDDESKPFMAPIIEFLAKNDYPLLVNVYP YFAYKSNSDRIDLNYALGNPGRSFVADGRLRYRCLFDSMVDVMYAAAEKVNGRKVRMVVTETGWPSAGDKVATMENAEAYVNNAAAKAGGSDAGTPRRPG IETETYLFALFNEDLKPEGEERNFGMYWPDFTEVYHVDFPSNLIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16260			Glycosyl hydrolase superfamily...		Lus10039233 [exp]	0	1
AT4G21020			Late embryogenesis abundant pr...		Lus10014004 [exp]	1.0	0.9441
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10029135 [exp]	4.0	0.7887
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	6.3	0.8319
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10015428 [exp]	7.7	0.8319
					Lus10003695 [exp]	8.9	0.8319
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10004471 [exp]	9.2	0.7438
					Lus10003774 [exp]	10.0	0.8319
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10005596 [exp]	11.0	0.8319
					Lus10033071 [exp]	11.8	0.8319
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014403 [exp]	12.0	0.7213

Compare expression of checked genes

Lus10039233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.