Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52400 620 / 0 CYP715A1 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) AT5G38450 302 / 2e-96 CYP735A1 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) AT2G46960 301 / 3e-96 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT5G24900 295 / 9e-94 ELA2, CYP714A2 EUI-like p450 A2, cytochrome P450, family 714, subfamily A, polypeptide 2 (.1) AT5G24910 292 / 1e-92 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) AT4G27710 291 / 2e-92 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1) AT2G46950 292 / 3e-92 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14680 289 / 1e-91 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14660 288 / 4e-91 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT1G67110 286 / 2e-90 CYP735A2 "cytochrome P450, family 735, subfamily A, polypeptide 2", cytochrome P450, family 735, subfamily A, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027480 [exp] 668 / 0 AT5G52400 424 / 6e-146 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Lus10017595 [exp] 317 / 4e-102 AT5G38450 697 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10033555 [exp] 315 / 2e-101 AT5G38450 694 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10008423 [exp] 305 / 9e-98 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10026085 [exp] 285 / 7e-90 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10025756 [exp] 283 / 5e-89 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10019184 [exp] 281 / 1e-88 AT3G14680 369 / 2e-122 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) Lus10026084 [exp] 278 / 4e-87 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10033044 [exp] 278 / 9e-87 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G145100 [exp] 763 / 0 AT5G52400 646 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Potri.012G142000 [exp] 686 / 0 AT5G52400 622 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Potri.019G064200 [exp] 341 / 1e-111 AT5G24910 652 / 0.0 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.017G114200 [exp] 334 / 7e-109 AT5G38450 724 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.004G100400 [exp] 323 / 6e-105 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.013G160800 [exp] 319 / 2e-103 AT5G24910 468 / 6e-161 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.008G026200 [exp] 315 / 1e-101 AT5G24910 488 / 8e-169 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.008G026300 [exp] 311 / 5e-100 AT5G24910 486 / 5e-168 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.018G070900 [exp] 288 / 3e-91 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G154500 [exp] 280 / 4e-88 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10039234 pacid=23175533 polypeptide=Lus10039234 locus=Lus10039234.g ID=Lus10039234.BGIv1.0 annot-version=v1.0 ATGGCGATGATCATCATGTCGGCGGCGGCTGCCCTTCTGGGCTATCTGTGCTGGAACTTGGTTTACGCCTTCTGGGTTTCGCCGCTCGCAGCTTATTACA AGCTCCGCCGCAACGGCTTCGGTGGGCCCGCTCCCAGCTTCCCGCTCGGCAATATTAAGGAGATGCGAACCATCGCCAAACTAACTGCTGTTTCTTCTTC TGGCGGCGCCGGCATTTCGCATGATATTCACTCCAATGTCTTCCCCTACTTTGCCCAGTGGCAGAAATCCCACGGGAAGGTGTTCGTGTACTGGTTGGGG ACCGAACCGTTCATGTACATAGCCAACCCGGAGTTTTTGAAGGAGATGTCGGCCGGAGTGATGGGGAAGAGCTGGGGAAAACCTCGGGTTTTCAAACAAG ACCGAGAACCCATGTTCGGTAACGGTTTGGTTATGGTCGAAGGCGACGATTGGGTTCGCCACCGCCACGTCATCACTCCTGCTTTCACCCCTTCCAACTT GAAGGCGATGTCGAGCTTGATGGTCGAGTCGACCACAAGGATGCTCGGGGAGTGGGACGCACTCATCTCCTCCGGAGTGCCAGAGATCGAAGTGGAGAGC CACATCACCGCGACAGCAGGAGAGATCATCGCGAAGACGAGCTTCGGGGTAGGATACAACGAGAGCGGGAGGATGGTGGTGGAGAAGTTGAGGGCAATGC AACTAACCCTCTTCAACTCGAACCGTTACGTGGGAGTACCGTACAGCAAGATCATGTGCCCTAGGAAAACCCTAGATGCAAAGAAGCTAGGGAAAGAGAT CGACTCCTTACTCCTCTCCATCATCTCCACCCGCAAGAACAACTTAAACATCACAACTAATAACAATAAGGATCTCCTAGGGTTGTTGCTACAAGAGAAC CACGCGGATGGCCGGCTTGGGAAGACCTTGACGACACGAGAGCTGGTCGACGAGTGCAAGACATTCTTCTTCGGAGGACACGAAACGACAGCGTTGGCAA TCTCTTGGACTTTGATGCTTTTGGCCAAGCATCCCGAGTGGCAAGATGAGTTGAGAAAAGAGATTAAGGAGGTTTCCAAGGATAAGATGGTCGACTTCAG CATGCTCTCCTCACTTAAGAAGATGGGTTGGGTAATGAACGAAGTCCTTCGACTCTACTCGCCGGCGCCAAACGTGCAACGACAAGCGAAAGAAGACATC AAAGTCTTCGACCGGACCATCCCGAAGGGGACCAACATGTGGATCGACGTAGTGGCGATGCACCACGACCGTACCCTGTGGGGAGACGACGTGTACGAGT TCAAGCCGGAGCGGTTCAAGGCGGACCCTCTGTACGGAGGGTGCAAGCACAAGATGGGGTTCATGCCGTTCGGGTTCGGAGGCCGAATGTGCGTCGGGAG GAACTTGACAATGATGGAGTACAAGATCGTTTTGTCGTTGATTTTGACGAGGTTTTCGTTCTCGTTGTCTCCTTCGTATGATCACTCTCCGGCGATCGTC CTCTCGTTGAGGCCCTCCCACGGTGTTCCTCTCGTGCTCCGGCCGTTGGTGTAA
AA sequence Show only first row Show all	>Lus10039234 pacid=23175533 polypeptide=Lus10039234 locus=Lus10039234.g ID=Lus10039234.BGIv1.0 annot-version=v1.0 MAMIIMSAAAALLGYLCWNLVYAFWVSPLAAYYKLRRNGFGGPAPSFPLGNIKEMRTIAKLTAVSSSGGAGISHDIHSNVFPYFAQWQKSHGKVFVYWLG TEPFMYIANPEFLKEMSAGVMGKSWGKPRVFKQDREPMFGNGLVMVEGDDWVRHRHVITPAFTPSNLKAMSSLMVESTTRMLGEWDALISSGVPEIEVES HITATAGEIIAKTSFGVGYNESGRMVVEKLRAMQLTLFNSNRYVGVPYSKIMCPRKTLDAKKLGKEIDSLLLSIISTRKNNLNITTNNNKDLLGLLLQEN HADGRLGKTLTTRELVDECKTFFFGGHETTALAISWTLMLLAKHPEWQDELRKEIKEVSKDKMVDFSMLSSLKKMGWVMNEVLRLYSPAPNVQRQAKEDI KVFDRTIPKGTNMWIDVVAMHHDRTLWGDDVYEFKPERFKADPLYGGCKHKMGFMPFGFGGRMCVGRNLTMMEYKIVLSLILTRFSFSLSPSYDHSPAIV LSLRPSHGVPLVLRPLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10039234 [exp]	0	1
					Lus10014739 [exp]	1.0	0.9730
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10033955 [exp]	6.0	0.9486
AT2G01340		At17.1	unknown protein		Lus10016709 [exp]	9.3	0.9621
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016991 [exp]	9.4	0.9663
AT5G09360		LAC14	laccase 14 (.1)		Lus10041067 [exp]	9.8	0.9616
AT5G17740			P-loop containing nucleoside t...		Lus10003213 [exp]	10.5	0.9607
AT1G78410			VQ motif-containing protein (....		Lus10023308 [exp]	11.6	0.9528
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039454 [exp]	11.9	0.9288
AT5G06500	MADS	AGL96	AGAMOUS-like 96 (.1)		Lus10029367 [exp]	12.2	0.9457
AT3G61680			alpha/beta-Hydrolases superfam...		Lus10009811 [exp]	12.4	0.9416

Compare expression of checked genes

Lus10039234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.