Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20850 1882 / 0 TPP2 tripeptidyl peptidase ii (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027482 [exp] 2496 / 0 AT4G20850 1956 / 0.0 tripeptidyl peptidase ii (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G142200 [exp] 2053 / 0 AT4G20850 1936 / 0.0 tripeptidyl peptidase ii (.1) Potri.015G145300 [exp] 2013 / 0 AT4G20850 1911 / 0.0 tripeptidyl peptidase ii (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12580 [flax] [poplar] TPPII Tripeptidyl peptidase II PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10039235 pacid=23175550 polypeptide=Lus10039235 locus=Lus10039235.g ID=Lus10039235.BGIv1.0 annot-version=v1.0 ATGCCTATCTCCTCCATTGCGACAGTCTCCGGAGGCGGCGGGGGCGACGCGGACGGAGCTCTCCGGAATTTCAAGCTCAACGAGTCCACTTTCCTCGCTT CTCTGATGCCGAAGAAGGAGATTGGCGCCGATCGCTTCATCGAGGCTCATCCTGAGTACGATGGCCGCGGTGTCATCATCGCGATTTTCGATTCTGGAAT GGATCCGGCGGCGGCGGGATTGCAAGTGACCACGGATGGGAAGCCGAAAGTTCTGGACGTTATTGATTGTACTGGAAGTGGTGATATTGACACTTCGAAG GTGGTGAAGGCTGATGCTGATGGCTGCATTGGAGGAGCTTCAGGAGCTTCTTTGGCTGTCAATCCTTCCTGGAAAAACCCTTCTGGAGAGTGGCATGTGG GTTGTAAGTTGGTATATGAACTATATACTGACACATTGACCTCCCGTTTGAAGAAAGAAAGGAAAAAGATATGGGACGAGAAAATCCAAGAAGAAATTGC CAAGGCAGTGAAGCATCTGTGTGAATTTGATCAGAAACACCCCAAATCGGAGGATGCTAACTTAAAGAGGATCCGTGAAGATCTCCAAAACAAAGTCGAT CTACTACGGAAGCAGGCTGATAACTATGATGACAAGGGACCTGTCATAGATGCTGTGGTGTGGTATGATGGAGAATTATGGAGGGCTGCTCTCGATACAC AAAACCTTGAGGATAATCCTGAGTGTGGAAAACTTGCTGACTTTGTTCCACTCACCAACTATAGGATTGAAAGGAAGTTTGGTGTCTTTAGCACGGTAGA TGCCTGCACAGCTGTTCTTAACATTTATGACGAGGGCAATATCTTAAGTATTGTAACAGATAGTTCTCCTCATGGCACCCATGTTTCTGGTATTGCTACT GCATTCCACCAAGAGGAACCACTATTGAATGGCATTGCACCTGGAGCACAAATAATATCTTGCAAAATAGGAGATTCACGGTTAGGTTCAATGGAGACGG GCACTGGCTTGACTAGGGCACTGATAGCAGCTGTTGAGCACAAATGCGATCTTATCAACATGAGTTATGGTGAACCGGCGTTGCTTCCAGATTATGGCCG TTTTGTTGATCTTGTCAATGAAGTGGTTAATAAACACCGTATTACATTTATCAGTAGTGCTGGTAATAGTGGTCCAGCATTAAGCACTGTTGGTGCTCCC GGTGGTACAAGTTCAAATATCATTGGAGTTGGTGCTTATGTTTCTCCTGCAATGGCTGCTGGTGCACATTCTGTTGTTGAAGCTCATGCTGAAGGCCTTG AATACACTTGGTCTAGTCGAGGACCAACAGTTGATGGTGATCTTGGAGTCTCTGTTAGTGCTCCTGGCGGGGCCGTCGCTCCTGTACCGACATGGACGCT TCAAAATCGCATGCTTATGAATGGCACATCAATGGCATCTCCATCTGCTTGTGGTGGAGCTGCGTTGCTCATTAGTGCTATGAAGGCAGAGGGCATTACT GTGAGCCCCTACACTGTAAGGAAAGCTTTGGAGAATACATCTCTTTATGTTGGAGAATGTTTGGCTGATAAATTAACCACTGGACAAGGGCTGATGCAAG TCGACAGGGCGTATGAATATGTATGTCAATCCCGGGATATTCCTATTTTTCAGTACAATATAAAGGTCAATCAATCCGGAAAATCAAGTAAGGATCTCAC TGGATATCTATACTTTTGTTCTGCTCCTATTTCCAGAGGCATCTACTTGAGAGAGGCTGTTGCTTGCCAACAATCTTCGGAGTGGGCTGTGCAAGTTGAA CCAAAGTTTCATGAAGGGGCAAGTAACTTGGAAGAGTTGGTTCCCTTCGAGGAATGTATTGAGTTATATTCTACTGACAAGACAGTTGTGAAGCCTCCCG AATATGTCCTTCTAACCCACAATGGGCGCAGCTTCAATATAGTGGTGGATCCTTCCAAGTTGAGTGTTGGGCTTCATTATTATGAAGTCTATGGCGTTGA TTGCAAGGCACCATGGAGAGGTCCTGTTTTCAGAATCCCGATTACTATTACAAAGCCTATGATTGTTGAAAATCGGCCTCCTCAGGTTTCGTTTTCAAGG ATGTCATTTCTGCCAGGTCATATTGAAAGGAGGTTTATTGAAGTGCCACTTGGTGCTAGTTGGGCTGAAGCTACTGTACGAGTTTCAGAGTTTGACACTA CACGACGATTTTTCCTTGATACCTTGCAGATCTGTCCCCTGCGAAGACCAATCAAATGGGAGAGTGTTGCTACATTTTCTTCTCCCGGTGCCAAAACGTT TTCTTTTCGTGTGGTGTCTGGGCAGACAATGGAACTAGCTGTTGCTCAGTTCTGGTCAAGTGGCTTGGGAAGTCATGATACCACTATTGTTGACTTTGAG ATTTCTTTCCATGGAATTGATGTCACTAAAGAGGAAATTATACTTGATGGAAGCGACGCCCCTGTTAGAATTGATACTGAAGCTCTTTTGGCATCCGAAA AGCTTTCTCCTGTTGCCCTTCTAAATAAGCTAAGAGTTCCATATCGACCAGTAGATTCTAAGCTTATTACCCTGACTGGAACCCGTGACAAATTACCCTC AGGAAAACAGACGCTAGCACTAACGTTAACGTATAAGTTCAAATTGGAAGATGGAGCTAACGTAAAACCTCAAGTTCCGCTCCTTAATAATAGGATATAC GATACTAAATTTGAGTCGCAATTCTATATGATTTCTGATGCGAACAAGCGTGTATATTCAGTCGGTGATGTCTATCCAGCAGCTTCAAAGCTCCCCAAGG GTGACTATACACTGCAATTGTATCTAAGGCATGATAACGTGCAGTATTTAGAAAAATTGAAGCAGTTGGTGTTGTTCATCGAGAAAACTTTGGAGGACAA GGATGTCATTCGATTGAACTTCTTCTCTGAACCCGATGGCCCTATAATGGGCAACGGTAGTTATAAATCCTCAGAGCTGGTTCCAGGGAAGAAGGAAGCA ATATACTTGGCTCCCCCCGCAAAAGACAAGCTTCCTAAGAATGCTCCTCAAGGATCAGTTCTGCTCGGAAAAATTTCTTATGGCAGGTTGTTGTCTGGAC AAGAAGCAGGCAAAAGTGGGCAGAAGAGTCCTGTATCATATCCGATCTCTTATGTTGTGCCTCCGAATAAGGTTGACGAGGACAAGCAGAAAGGTTCTTC AGCTTCTTCCACCAAATCAGTTTCGGAACGTATAGAAGAAGAGGTACGAGATGCAAAGATAAAGATTTTGGGAAGCTTAAAGCAGGAGACAGAGGAAGAA CGCTCAGAATGGAAAAAGCTCTCTGATGCCCTCAAGGCTGAATATCCTCAACACACTCCATTGCTTGCTAAGATTCTAGAGGGCTTACATTCTCGAAGTA AGATCGATGACAAGATTAAGCACAGTCAAGAGGTCATAGCGACAGCAGATGAGGTGATCAGCAGTGTCGACAAAGATGAGTTGGCGAAATTCTTTTCGTA CAAGCCTGACCCAGAAGACGAGGAGGCAGAGAAAATGAAGAAGAAGATGGAGACTACTAGAGATCAACTAGCAGAAGCGCTTTACTCAAAGGGTCTGGCC CTCTCCGAAATCGAATCTCTCAAGAACAGCGATAAAACTGAAACAGAGGCAGGAGCAGAAGGCAACATAGATGAATGGACAGACGTGCGAAAAGAAGCAT CAGAAGAGTCTGGTTCGAAGCAAGATACGTTCGAAGAGACTTTCAAAGAACTACAGAAATGGGTCGATGTAAAGTCGTCTAAGTTCGGCACCCTTTATGT CCTCCGCGAGAAGCGACGTGGAAGGCTTGGAACAGCCCTCAAGGTGTTGAACGACATGATCTTAGAAGACGGAGACCCTCCGAAGAAGAAACTCTACGAA ATGAAGCTCTCATTACTGGAAGAGATCGGATGGACGCATCTTACTGCCTACGAGAAACAATGGATGCACGTCCGTTTCCCGTCGAGCCTTCCTCTTTTCT GA
AA sequence Show only first row Show all	>Lus10039235 pacid=23175550 polypeptide=Lus10039235 locus=Lus10039235.g ID=Lus10039235.BGIv1.0 annot-version=v1.0 MPISSIATVSGGGGGDADGALRNFKLNESTFLASLMPKKEIGADRFIEAHPEYDGRGVIIAIFDSGMDPAAAGLQVTTDGKPKVLDVIDCTGSGDIDTSK VVKADADGCIGGASGASLAVNPSWKNPSGEWHVGCKLVYELYTDTLTSRLKKERKKIWDEKIQEEIAKAVKHLCEFDQKHPKSEDANLKRIREDLQNKVD LLRKQADNYDDKGPVIDAVVWYDGELWRAALDTQNLEDNPECGKLADFVPLTNYRIERKFGVFSTVDACTAVLNIYDEGNILSIVTDSSPHGTHVSGIAT AFHQEEPLLNGIAPGAQIISCKIGDSRLGSMETGTGLTRALIAAVEHKCDLINMSYGEPALLPDYGRFVDLVNEVVNKHRITFISSAGNSGPALSTVGAP GGTSSNIIGVGAYVSPAMAAGAHSVVEAHAEGLEYTWSSRGPTVDGDLGVSVSAPGGAVAPVPTWTLQNRMLMNGTSMASPSACGGAALLISAMKAEGIT VSPYTVRKALENTSLYVGECLADKLTTGQGLMQVDRAYEYVCQSRDIPIFQYNIKVNQSGKSSKDLTGYLYFCSAPISRGIYLREAVACQQSSEWAVQVE PKFHEGASNLEELVPFEECIELYSTDKTVVKPPEYVLLTHNGRSFNIVVDPSKLSVGLHYYEVYGVDCKAPWRGPVFRIPITITKPMIVENRPPQVSFSR MSFLPGHIERRFIEVPLGASWAEATVRVSEFDTTRRFFLDTLQICPLRRPIKWESVATFSSPGAKTFSFRVVSGQTMELAVAQFWSSGLGSHDTTIVDFE ISFHGIDVTKEEIILDGSDAPVRIDTEALLASEKLSPVALLNKLRVPYRPVDSKLITLTGTRDKLPSGKQTLALTLTYKFKLEDGANVKPQVPLLNNRIY DTKFESQFYMISDANKRVYSVGDVYPAASKLPKGDYTLQLYLRHDNVQYLEKLKQLVLFIEKTLEDKDVIRLNFFSEPDGPIMGNGSYKSSELVPGKKEA IYLAPPAKDKLPKNAPQGSVLLGKISYGRLLSGQEAGKSGQKSPVSYPISYVVPPNKVDEDKQKGSSASSTKSVSERIEEEVRDAKIKILGSLKQETEEE RSEWKKLSDALKAEYPQHTPLLAKILEGLHSRSKIDDKIKHSQEVIATADEVISSVDKDELAKFFSYKPDPEDEEAEKMKKKMETTRDQLAEALYSKGLA LSEIESLKNSDKTETEAGAEGNIDEWTDVRKEASEESGSKQDTFEETFKELQKWVDVKSSKFGTLYVLREKRRGRLGTALKVLNDMILEDGDPPKKKLYE MKLSLLEEIGWTHLTAYEKQWMHVRFPSSLPLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10039235 [exp]	0	1
AT4G30790			unknown protein		Lus10005509 [exp]	3.7	0.9339
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	9.8	0.9346
AT3G04600			Nucleotidylyl transferase supe...		Lus10017122 [exp]	9.8	0.8939
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10008205 [exp]	19.4	0.8810
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Lus10034306 [exp]	20.6	0.9272
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10007731 [exp]	20.7	0.9260
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10024030 [exp]	23.0	0.9274
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	28.7	0.9253
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10024916 [exp]	29.6	0.9072
AT1G06840			Leucine-rich repeat protein ki...		Lus10034445 [exp]	30.0	0.9177

Compare expression of checked genes

Lus10039235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.