Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54010 228 / 2e-71 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 224 / 1e-69 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT5G53990 219 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) AT1G64920 218 / 2e-67 UDP-Glycosyltransferase superfamily protein (.1) AT2G22930 213 / 1e-65 UDP-Glycosyltransferase superfamily protein (.1) AT4G09500 210 / 1e-64 UDP-Glycosyltransferase superfamily protein (.1.2) AT4G27570 209 / 2e-64 UDP-Glycosyltransferase superfamily protein (.1) AT4G27560 209 / 3e-64 UDP-Glycosyltransferase superfamily protein (.1) AT1G64910 208 / 6e-64 UDP-Glycosyltransferase superfamily protein (.1) AT3G29630 200 / 9e-61 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040178 [exp] 436 / 1e-152 AT5G54010 437 / 7e-151 UDP-Glycosyltransferase superfamily protein (.1) Lus10004381 [exp] 422 / 3e-147 AT5G54060 437 / 1e-150 UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) Lus10013337 [exp] 305 / 3e-101 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10008453 [exp] 228 / 4e-71 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 162 / 7e-46 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10028865 [exp] 92 / 1e-20 AT5G49690 191 / 1e-55 UDP-Glycosyltransferase superfamily protein (.1) Lus10013367 [exp] 86 / 3e-20 AT4G27570 144 / 1e-41 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 88 / 4e-19 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10008955 [exp] 83 / 2e-17 AT5G49690 190 / 4e-55 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G097900 [exp] 231 / 2e-72 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G061000 [exp] 202 / 2e-61 AT5G54010 468 / 6e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 160 / 2e-45 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G041900 [exp] 136 / 8e-37 AT5G54010 348 / 1e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 110 / 3e-27 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 101 / 6e-24 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 93 / 7e-21 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 86 / 3e-18 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 81 / 1e-16 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 78 / 9e-16 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039237 pacid=23175713 polypeptide=Lus10039237 locus=Lus10039237.g ID=Lus10039237.BGIv1.0 annot-version=v1.0 ATGAGTGAATCAAACAAACAACTGAAGGTGGCGATGTTCCCACCGTTCACAATGAGACACATCACCCCTTCCGTCCACTTGGCAAACCAGCTGGCCGCCC GAGGCCACCGTGTCTCTTTATTGCTGCTAACTCGTACAATCCTCAGGGTAACCAATCTCAACACTCACCCGAATCTCGTCACCTTCCACCCAATCACAGT CCCACACGTTGAAGGCCTCCCGCAGGGTGCCGAGCTCATCGGCGCCGAAGTGCCACCTCATCTCACATGCCACATATTCACCGCCATTGACGCCACGGAG GAACAGGTCAGGAACATTATCGGCCACGTCAAGCCGGACTTCTTCCTATTCGACTCCGCTCCATGGATCCCACGCGCCGGCCGCATGTTGGGATTCGTCT CCGTGTCGTACAGCCCCGTTTCAGCCATCTGGACCGCGCTCCGGATGGTCCCCTCGGCGAAGATCGTGAAAGGAATGAGCGACGAGGAGCTTGGGAGGGC CCCACCGGGGTACCCGTCATCGGTGGTGGTCCCCAGGAGGGATGAAATAGCTGCGGTGAGGGTTTTCGCGATGGAATTCGGAACGGTGTCGCTTTACGAA CGGATAGTGTCAGTGATCCGGGAAGGTGAAGTCATGGCTATGAGGAGTTGCCGTGAGCTTGAAGGTAAGTACGTGGATTATCTCGAGGAGCAATACGGGA AACGGGTGTTGTTGACAGGGCCTTCTTTGCCCAAGCCTGATGGGTTAGGCGTGGATGAAGAGTTGGGCTCATGCCTCTCCAAATTCGAGCCCAATTCAGT TGTCTACTGCGCGTTTGGGAGGGAATTCGTTCTCCACAAGGACCAGTTCCAGGAGCTCCTCAGGGGATTGGAGCAATGCAGACGACCATATTTGACGGCG CTAAAGCCACCACACGATTACCAGATGAAGGGTTCAGGGATAGGGTGTCGGGGAGAGGAATAG
AA sequence Show only first row Show all	>Lus10039237 pacid=23175713 polypeptide=Lus10039237 locus=Lus10039237.g ID=Lus10039237.BGIv1.0 annot-version=v1.0 MSESNKQLKVAMFPPFTMRHITPSVHLANQLAARGHRVSLLLLTRTILRVTNLNTHPNLVTFHPITVPHVEGLPQGAELIGAEVPPHLTCHIFTAIDATE EQVRNIIGHVKPDFFLFDSAPWIPRAGRMLGFVSVSYSPVSAIWTALRMVPSAKIVKGMSDEELGRAPPGYPSSVVVPRRDEIAAVRVFAMEFGTVSLYE RIVSVIREGEVMAMRSCRELEGKYVDYLEEQYGKRVLLTGPSLPKPDGLGVDEELGSCLSKFEPNSVVYCAFGREFVLHKDQFQELLRGLEQCRRPYLTA LKPPHDYQMKGSGIGCRGEE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54010			UDP-Glycosyltransferase superf...		Lus10039237 [exp]	0	1
					Lus10011078 [exp]	4.9	1.0000
					Lus10022518 [exp]	5.7	1.0000
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	9.5	1.0000
					Lus10027689 [exp]	9.6	1.0000
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025669 [exp]	14.7	1.0000
					Lus10034328 [exp]	19.0	0.9975
					Lus10003536 [exp]	19.3	1.0000
					Lus10027991 [exp]	19.7	1.0000
AT1G14000		VIK	VH1-interacting kinase (.1)		Lus10004066 [exp]	19.7	1.0000
					Lus10008385 [exp]	21.2	0.9921

Compare expression of checked genes

Lus10039237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.