Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23870 513 / 0 Pectinacetylesterase family protein (.1.2.3) AT2G46930 428 / 6e-149 Pectinacetylesterase family protein (.1) AT3G62060 415 / 6e-144 Pectinacetylesterase family protein (.1) AT5G26670 413 / 5e-143 Pectinacetylesterase family protein (.1.2) AT1G57590 413 / 1e-142 Pectinacetylesterase family protein (.1) AT4G19420 409 / 1e-141 Pectinacetylesterase family protein (.1.2) AT3G09410 398 / 5e-137 Pectinacetylesterase family protein (.1.3) AT3G05910 395 / 2e-136 Pectinacetylesterase family protein (.1.2) AT5G45280 364 / 3e-124 Pectinacetylesterase family protein (.1.2) AT4G19410 362 / 1e-123 Pectinacetylesterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038024 [exp] 409 / 1e-141 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 409 / 2e-141 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10007200 [exp] 404 / 1e-139 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1) Lus10035682 [exp] 391 / 1e-134 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10024398 [exp] 392 / 2e-134 AT3G09410 553 / 0.0 Pectinacetylesterase family protein (.1.3) Lus10034767 [exp] 384 / 1e-131 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 384 / 1e-131 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10037269 [exp] 383 / 1e-129 AT4G19420 548 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033301 [exp] 369 / 4e-126 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G142300 [exp] 538 / 0 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.015G145400 [exp] 530 / 0 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.010G004400 [exp] 421 / 3e-146 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 420 / 8e-146 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.013G000900 [exp] 419 / 3e-145 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.014G110900 [exp] 413 / 1e-142 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.006G084900 [exp] 412 / 2e-142 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.004G234100 [exp] 394 / 1e-135 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G233900 [exp] 373 / 1e-127 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 369 / 8e-126 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03283 [flax] [poplar] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Lus10039238 pacid=23175693 polypeptide=Lus10039238 locus=Lus10039238.g ID=Lus10039238.BGIv1.0 annot-version=v1.0 ATGGAGCCGTTAATGGTTCTGACGGCGACGGTGGCTTTGCTCTGTTTCACGGTTTGCTCGGCGGACAGGGTTGGCGTTCCGATGACTCTGGTCCACGCCG CCGCCGCCAAGGGAGCTCTTTGCTTGGACGGGAGTTTGCCTGCTTACCATCTCCAAAGAGGATTCGGCGCCGGCGCCAACAACTGGCTTTTGCAGTTCGA GGGAGGTGGGTGGTGTAACACCGTGGACTCTTGCTGGGAGAGAGCCAAAACAAGGCGGGGATCTACCAGTCTTATGGTCAAGCTAGAGAACTTCTCTGGC ATCTTGAGCAACAATGCTTCTCTTAATCCGGACTTTTACAACTGGAACCGTGTGAAGCTAAGATACTGCGACGGAGCATCCTTCACCGGCGATTCCAAGA TCGTCAACGGCTCATCAGTTCTTTACTTCAGAGGGCAGAGGATTTGGGATGCCATTATTACCGACCTCCTTCCCAAAGGCTTGGCCAACGCACGCAAGGC GTTGCTTTCTGGTTGTTCAGCCGGAGGCTTGTCGGTTTTCCACCATTGCGAGGATTTCTCCAGAAGGTTACCGAACACAGTGGTCAAATGTTTGAGCGAT GCCGGATTCTTCCTCGACGTGAAGGACGTAGCTTCGAATTACACCATGAGGGCATTTTTTGAAGATCTTGTTACACTCCAGGGAGTAGAGAAGAACCTTG ATGAAAAATGCACGAATTCCCTCCCCGATCCCAAACAATGCTTCTTCCCGCAGTACGCTCTTCGATACATAACGACACCATTCTTCCTGTTGAATTCAGC CTACGACGTCTACCAGATAAACCACATATTGGTCCCACCTTCTGCGGATGTCCACGGAAGCTGGAGAGGGTGCAAGACACGCATATCAGGGTGCACCCCA ACCCAAATTGAGGATCTCCAAGGTTTGAGGATAGAGATGCTCAAGGCGTCGCTCGCCTTCTATAGAGGCGTAGACATGAACGGAATGTTCATCAACTCGT GCTTCTCTCATTGCCAGAGCGAGTTCCAGCCCACCTGGTTCGATCTCAACTCGCCCATGATACAAAACAAGACGATAGCGGAAGCTGTGGGGGACTGGTA TTTCGGAAGGAAGGTGACGAAGTTGATCGACTCGCCTTATCCGAGTGGTGACAGTTGCTATAACCTTATAGCTAATTAG
AA sequence Show only first row Show all	>Lus10039238 pacid=23175693 polypeptide=Lus10039238 locus=Lus10039238.g ID=Lus10039238.BGIv1.0 annot-version=v1.0 MEPLMVLTATVALLCFTVCSADRVGVPMTLVHAAAAKGALCLDGSLPAYHLQRGFGAGANNWLLQFEGGGWCNTVDSCWERAKTRRGSTSLMVKLENFSG ILSNNASLNPDFYNWNRVKLRYCDGASFTGDSKIVNGSSVLYFRGQRIWDAIITDLLPKGLANARKALLSGCSAGGLSVFHHCEDFSRRLPNTVVKCLSD AGFFLDVKDVASNYTMRAFFEDLVTLQGVEKNLDEKCTNSLPDPKQCFFPQYALRYITTPFFLLNSAYDVYQINHILVPPSADVHGSWRGCKTRISGCTP TQIEDLQGLRIEMLKASLAFYRGVDMNGMFINSCFSHCQSEFQPTWFDLNSPMIQNKTIAEAVGDWYFGRKVTKLIDSPYPSGDSCYNLIAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23870			Pectinacetylesterase family pr...		Lus10039238 [exp]	0	1
AT3G61260			Remorin family protein (.1)		Lus10027460 [exp]	4.0	0.8006
AT5G35570			O-fucosyltransferase family pr...		Lus10021557 [exp]	4.7	0.8107
AT5G35180			Protein of unknown function (D...		Lus10040015 [exp]	7.5	0.7936
AT2G33205			Serinc-domain containing serin...		Lus10023690 [exp]	9.0	0.7492
AT3G06070			unknown protein		Lus10010508 [exp]	11.1	0.8054
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10030628 [exp]	14.4	0.7559
AT1G32780			GroES-like zinc-binding dehydr...		Lus10033241 [exp]	16.7	0.8240
AT5G50800		SWEET13, AtSWEE...	Nodulin MtN3 family protein (....		Lus10005935 [exp]	21.7	0.7308
AT2G21140		ATPRP2	proline-rich protein 2 (.1)		Lus10042392 [exp]	23.5	0.7942
					Lus10028745 [exp]	25.1	0.7012

Compare expression of checked genes

Lus10039238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.