Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33410 631 / 0 ATSPPL1 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) AT1G05820 110 / 2e-26 ATSPPL5 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) AT1G63690 105 / 1e-24 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT2G43070 105 / 2e-24 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT2G03120 102 / 2e-24 ATSPP signal peptide peptidase (.1) AT1G01650 99 / 1e-22 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027484 [exp] 608 / 0 AT4G33410 512 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Lus10001154 [exp] 115 / 4e-28 AT1G05820 563 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) Lus10037594 [exp] 104 / 6e-25 AT2G03120 535 / 0.0 signal peptide peptidase (.1) Lus10031104 [exp] 105 / 1e-24 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10006852 [exp] 102 / 2e-24 AT2G03120 537 / 0.0 signal peptide peptidase (.1) Lus10017796 [exp] 103 / 4e-24 AT1G01650 802 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10024653 [exp] 103 / 8e-24 AT1G63690 744 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10018834 [exp] 99 / 1e-22 AT1G01650 685 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10032285 [exp] 99 / 3e-22 AT1G63690 713 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G142400 [exp] 664 / 0 AT4G33410 633 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.015G145600 [exp] 645 / 0 AT4G33410 614 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 (.1) Potri.002G232200 [exp] 111 / 1e-26 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.002G160500 [exp] 108 / 7e-26 AT1G01650 838 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.014G150000 [exp] 108 / 1e-25 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.003G128500 [exp] 106 / 5e-25 AT1G63690 857 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.001G276700 [exp] 103 / 6e-25 AT2G03120 550 / 0.0 signal peptide peptidase (.1) Potri.009G071600 [exp] 101 / 4e-24 AT2G03120 542 / 0.0 signal peptide peptidase (.1) Potri.014G085300 [exp] 103 / 5e-24 AT1G01650 810 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.001G103100 [exp] 100 / 7e-23 AT1G63690 829 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0130 [flax] [poplar] Peptidase_AD PF04258 [flax] [poplar] Peptidase_A22B Signal peptide peptidase
Representative CDS sequence Show only first row Show all	>Lus10039239 pacid=23175589 polypeptide=Lus10039239 locus=Lus10039239.g ID=Lus10039239.BGIv1.0 annot-version=v1.0 ATGGAGTCTCTGTGGAAGCTTCTATACTTGCTGGGGCCAGCACCAGTCACGCTCATATTAACGGCAGTAGCCGTCACGTTCGGAGCTGCATTTCGCGCTT TGAACTACGGGAAAGAGATGGAAAAGAATCACGACTTATCCGAAGCTTCCATTACCTTAGATAGATCACAAGCACTGATGATCCCAGTAATGAGCTCTTG CAGTTTGCTCCTGATGTTTTACCTCTTCTCTTCCGTTTCTCAGCTTCTCACAGCCTTCACAGCCGTGGCATCCGTTTCCTCCCTATACTTCTGTGTCGCT CCTTACGCCGCCTATGTGAAGTCTCACTACGGTTTGTCCGATCCCTTTGTTTCACGTTGCTGTTCGAAACCGCTTTCTCGTATTCAAGGGCTGTTACTGC TGACGTGTGTTATTACGGTTGTGGCGTGGCTGGTTTCTGGGCACTGGATGTTGAACAACCTGTTGGGGATTTCTATATGCGTTGCGTTTGTGAGTCATGT CCGGCTTCCGAACATCAAGATATGTGCTATGCTGCTGGCGTGTTTGTTCGTGTACGATATATTCTGGGTGTTCTTTTCAGAGAGGTTCTTTGGTGCCAAT GTGATGGTATCGGTTGCTACACAGCAGGCTTCTAATCCGGTTCATACAGTTGCTAACAGTTTGAGTCTTCCTGGCTTGCAATTGATTACTAAGAAACTTG AGCTGCCTGTTAAGATAATTTTCCCGAGGAACTTGCTGGGTAGCACGTTTTATGGAGGAACTGCCTCTGACTTCATGATGCTTGGTCTTGGCGATATGGC GATTCCGGCTATGCTTCTAGCACTAGTCCTATGCTTCGATCACAGAAAGAACAGAGACCCAGTGTCTCTTATGGAACTACATTCCTCCAAGGGTCACAAA TACATATGGTACGCTCTACCTGGCTACGCCATTGGTCTGGTAACGGCTTTAGCAGCTGGCATCCTAACACACTTACCCCAGCCGGCTCTTCTTTACCTGG TTCCTTCAACACTAGGACCTGTGGTTATCAGTTCATGGTTCAGGAGAGATCTGGCGGAGTTATGGGAAGGAAGCATTTCGAATCCGTCGGATAAAGCTCG CGAAATAGAAGCTTGA
AA sequence Show only first row Show all	>Lus10039239 pacid=23175589 polypeptide=Lus10039239 locus=Lus10039239.g ID=Lus10039239.BGIv1.0 annot-version=v1.0 MESLWKLLYLLGPAPVTLILTAVAVTFGAAFRALNYGKEMEKNHDLSEASITLDRSQALMIPVMSSCSLLLMFYLFSSVSQLLTAFTAVASVSSLYFCVA PYAAYVKSHYGLSDPFVSRCCSKPLSRIQGLLLLTCVITVVAWLVSGHWMLNNLLGISICVAFVSHVRLPNIKICAMLLACLFVYDIFWVFFSERFFGAN VMVSVATQQASNPVHTVANSLSLPGLQLITKKLELPVKIIFPRNLLGSTFYGGTASDFMMLGLGDMAIPAMLLALVLCFDHRKNRDPVSLMELHSSKGHK YIWYALPGYAIGLVTALAAGILTHLPQPALLYLVPSTLGPVVISSWFRRDLAELWEGSISNPSDKAREIEA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10039239 [exp]	0	1
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10036485 [exp]	1.4	0.9324
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10013295 [exp]	2.4	0.9303
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10041857 [exp]	4.2	0.9103
AT3G11320			Nucleotide-sugar transporter f...		Lus10028255 [exp]	4.9	0.8942
AT3G49720			unknown protein		Lus10019279 [exp]	6.3	0.9022
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10036337 [exp]	7.0	0.9065
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10040885 [exp]	7.1	0.9223
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10027484 [exp]	10.0	0.8942
AT1G71980			Protease-associated (PA) RING/...		Lus10016936 [exp]	10.7	0.8495
AT2G25760			Protein kinase family protein ...		Lus10005479 [exp]	10.8	0.8685

Compare expression of checked genes

Lus10039239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.