Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49050 538 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT4G00500 468 / 7e-164 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G37710 408 / 2e-140 alpha/beta-Hydrolases superfamily protein (.1) AT2G42450 53 / 2e-07 alpha/beta-Hydrolases superfamily protein (.1) AT4G16070 46 / 3e-05 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT3G14075 44 / 0.0002 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027485 [exp] 678 / 0 AT3G49050 616 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037847 [exp] 498 / 2e-175 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10030391 [exp] 430 / 2e-149 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10010983 [exp] 230 / 6e-73 AT5G37710 384 / 3e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10000445 [exp] 230 / 1e-72 AT5G37710 385 / 1e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10000444 [exp] 147 / 6e-43 AT5G37710 191 / 5e-60 alpha/beta-Hydrolases superfamily protein (.1) Lus10005809 [exp] 97 / 1e-23 AT5G37710 144 / 1e-41 alpha/beta-Hydrolases superfamily protein (.1) Lus10015680 [exp] 58 / 9e-09 AT3G14075 744 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10008121 [exp] 56 / 6e-08 AT3G14075 763 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G142700 [exp] 561 / 0 AT3G49050 654 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G083600 [exp] 521 / 0 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.015G145900 [exp] 518 / 0 AT3G49050 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G159200 [exp] 508 / 8e-180 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G130000 [exp] 420 / 6e-145 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G086900 [exp] 414 / 2e-142 AT5G37710 599 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G067900 [exp] 56 / 3e-08 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.005G222000 [exp] 51 / 1e-06 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G005800 [exp] 44 / 0.0002 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03893 [flax] [poplar] Lipase3_N Lipase 3 N-terminal region CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10039240 pacid=23175452 polypeptide=Lus10039240 locus=Lus10039240.g ID=Lus10039240.BGIv1.0 annot-version=v1.0 ATGTGTATAATATGTGGGATACCTCTCCTAGAATGTGTATACTGTCTAGCCTGCGCTAGATGGGCATGGAAACGCTGCCTCTACACAGCAGGACACGACA GCGAGACATGGGGAATCGCATCGCCCCACGAATTCGACCCGGTCCCACGAATGTGTCGGTACATTCTATCAGTCTACGAGGATGATCTCTTCAACCCGCA ATGGGAGCCTCCAGGAGGGTACGGAATCAACCCTGACTGTGTCAAGCTAAAGAGGACTTATTTAGACACTCAAGGGAGGGCCCCACCTTACTTGCTCTAC CTCGATCACAAACATTCCGATATAGTTCTGGCGATTCGGGGGCTGAATCTGGCAAGGGAGAGTGATTACAAGCTGCTGTTGGATAATAAGTTGGGGGAGA TGAAGGTTGCTGGCGGGTATGTTCATAATGGGCTGATGAAGGCTGCTAGCTGGATTCTTGAGTCTGAATGTGAGGTTTTGAAGGAAGTTTTGAGGGATTT TTCGAGTTATAGTCTTACTTTCGCGGGGCATTCGCTTGGAGCGGGTGTTGCTGCAATGTTGGCTTTGGTTGTGGTTTTGAATGGTGGTGGGAAGTTGGGC TGCATTGAGAGGAAGAGGATCAGGTGCTTTGCTATTGCGCCTGCGAGATGTATGTCGTTGAATTTGGCTGTTCGATATGCGGATGTGATCTACTCGGTTG TGCTTCAGGATGATTTCTTGCCCCGGACTGCAACACCGTTGGAAGACATCTTCACTTCACTCTTCTGTTTGCCATGCCTTCTATGCCTAAGGTGCATGAA GGACACCTGCATCTCGGAACAACAGATGATCAAGGATCCCAGGAGGCTCTATGCACCAGGTCGCATATACCACATTGTTCAACGAAAGCCTTTCAGAATG GGAAGGTTCCCACCAGTTGTAAGGACAGCAGTACCAGTAGACGGGAGGTTCGAACACATAGTTCTATCATGTAACGCGATTTCTGATCACGCTATCATAT GGATCGAAAAGGAATCACAAAGAGCTCTCAATCTGATGTTGGAGAAGGATGGAGCCACGGAGATTCCTGAAAAGCAAAGGATGGAACGAGAGGAGACGGT GACTCGAGAGTACAGGGAAGCATTGCACAGAGCTGTCACGCTTGCAGTGCCTCATTCAGAGTTCTTGTCTCGGTATGGAACATTTAGTGGCGGTGACGTT GAAGAAGAGGAAGAAAGATGCTATGGTTCATCATCTAGTGGGAAGGATTGA
AA sequence Show only first row Show all	>Lus10039240 pacid=23175452 polypeptide=Lus10039240 locus=Lus10039240.g ID=Lus10039240.BGIv1.0 annot-version=v1.0 MCIICGIPLLECVYCLACARWAWKRCLYTAGHDSETWGIASPHEFDPVPRMCRYILSVYEDDLFNPQWEPPGGYGINPDCVKLKRTYLDTQGRAPPYLLY LDHKHSDIVLAIRGLNLARESDYKLLLDNKLGEMKVAGGYVHNGLMKAASWILESECEVLKEVLRDFSSYSLTFAGHSLGAGVAAMLALVVVLNGGGKLG CIERKRIRCFAIAPARCMSLNLAVRYADVIYSVVLQDDFLPRTATPLEDIFTSLFCLPCLLCLRCMKDTCISEQQMIKDPRRLYAPGRIYHIVQRKPFRM GRFPPVVRTAVPVDGRFEHIVLSCNAISDHAIIWIEKESQRALNLMLEKDGATEIPEKQRMEREETVTREYREALHRAVTLAVPHSEFLSRYGTFSGGDV EEEEERCYGSSSSGKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49050			alpha/beta-Hydrolases superfam...		Lus10039240 [exp]	0	1
AT3G08030			Protein of unknown function, D...		Lus10029501 [exp]	3.7	0.8409
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004918 [exp]	6.8	0.8402
AT4G13550			triglyceride lipases;triglycer...		Lus10004394 [exp]	8.1	0.7957
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10008612 [exp]	11.2	0.8049
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10031063 [exp]	11.4	0.8294
AT1G54380			spliceosome protein-related (....		Lus10025495 [exp]	11.5	0.7412
AT2G26730			Leucine-rich repeat protein ki...		Lus10001900 [exp]	12.0	0.8104
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10010307 [exp]	15.9	0.8076
AT4G23820			Pectin lyase-like superfamily ...		Lus10001899 [exp]	16.0	0.7874
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030518 [exp]	18.0	0.8091

Compare expression of checked genes

Lus10039240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.