Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02630 645 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT2G43710 637 / 0 FAB2, SSI2 suppressor of SA insensitive 2, FATTY ACID BIOSYNTHESIS 2, Plant stearoyl-acyl-carrier-protein desaturase family protein (.1.2) AT5G16240 614 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT3G02610 561 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT5G16230 549 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT3G02620 544 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT1G43800 521 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027486 [exp] 824 / 0 AT3G02630 649 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Lus10028627 [exp] 526 / 0 AT1G43800 598 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Lus10018926 [exp] 526 / 0 AT1G43800 594 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G077900 [exp] 686 / 0 AT3G02630 657 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.010G179400 [exp] 682 / 0 AT3G02630 640 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.013G127300 [exp] 657 / 0 AT2G43710 696 / 0.0 suppressor of SA insensitive 2, FATTY ACID BIOSYNTHESIS 2, Plant stearoyl-acyl-carrier-protein desaturase family protein (.1.2) Potri.002G209602 [exp] 599 / 0 AT3G02630 592 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.010G179500 [exp] 597 / 0 AT3G02630 595 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.005G187600 [exp] 526 / 0 AT1G43800 613 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [flax] [poplar] Ferritin PF03405 [flax] [poplar] FA_desaturase_2 Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10039241 pacid=23175473 polypeptide=Lus10039241 locus=Lus10039241.g ID=Lus10039241.BGIv1.0 annot-version=v1.0 ATGGCTCTCAAGCTCAACCCAGTCACCACCTTCCCTTCGACCCGCTCCCTCAACAACTTCTCCTCCAGATCTCCTCGCACCTTTCTCATGGCTGCTTCCA CTTTCAATTCCACTTCCACCAAGGAGGCTGAGAAGCTAAAGAAGTCACATGGACCACCAAAAGAGGTGCATATGCAAGTGACCCATTCCATGCCCCCACA GAAGCTGGAGATCTTTAAGTCCCTTGAAGGTTGGGCAGAGGACGTTCTGTTGCCGCACCTGAAGCCGGTTGAGAAATGCTGGCAGCCACAAGATTTCCTG CCCGAACCCGAGTCGGATGGGTTCGAGGAGCAAGTGAAGGAGCTCAGGGCAAGGGCTAAAGAACTCCCCGATGACTATTTTGTTGTGCTGGTTGGGGATA TGATCACCGAAGAAGCTCTACCGACTTACCAGACAATGCTCAACACCCTTGACGGGGTGAGGGACGAGACTGGAGCCAGCCTTACGCCGTGGGCAATCTG GACAAGGGCGTGGACCGCTGAAGAGAATAGGCACGGTGACCTTCTCAACAAGTATCTTTACCTCTCTGGAAGGGTGGACATGAGGCAAATTGAAAAGACC ATTCAGTATCTCATCGGCTCTGGAATGGATCCAAAAACAGAAAACAACCCCTACCTCGGTTTCATCTACACCTCATTCCAAGAGAGGGCAACGTTCATCT CCCACGGAAATACGGCCAGACTCGCCAAGGACCACGGGGACATGAAGCTGGCGCAGATCTGCGGGATCATCGCAGCAGACGAGAAGCGGCACGAAACAGC ATACACCAAGATCGTCGAGAAGCTCTTCGAGATCGACCCTGACAGTACAGTGTTGGCTCTGGCGGACATGATGAGGAAGAAGATATCGATGCCCGCACAC TTGATGTACGATGGAGAAGACGACAACCTCTTCGACAATTACTCGTCGGTCGCTCAACGCATCGGGGTGTATACTGCCAAGGATTATGCTGATATCCTGG AGTTCCTGGTGGGGAGGTGGAAAGTGGATGCTTTTACGGGACTTTCCGGGGAAGGGAACAAAGCTCAGGAGTTTGTCTGTGGGCTTCCAGCGAGGATTCG AAAATTGGAGGAGAGGGCTGCGGGGAGGGCAAAGCAAACGTCGAAATCTGTCCCATTCAGCTGGATCTTCAGCAGAGAATTGGTACTCTAA
AA sequence Show only first row Show all	>Lus10039241 pacid=23175473 polypeptide=Lus10039241 locus=Lus10039241.g ID=Lus10039241.BGIv1.0 annot-version=v1.0 MALKLNPVTTFPSTRSLNNFSSRSPRTFLMAASTFNSTSTKEAEKLKKSHGPPKEVHMQVTHSMPPQKLEIFKSLEGWAEDVLLPHLKPVEKCWQPQDFL PEPESDGFEEQVKELRARAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKT IQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKDHGDMKLAQICGIIAADEKRHETAYTKIVEKLFEIDPDSTVLALADMMRKKISMPAH LMYDGEDDNLFDNYSSVAQRIGVYTAKDYADILEFLVGRWKVDAFTGLSGEGNKAQEFVCGLPARIRKLEERAAGRAKQTSKSVPFSWIFSRELVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10039241 [exp]	0	1
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Lus10027486 [exp]	1.0	0.9522
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Lus10038323 [exp]	2.0	0.8303
AT4G19450			Major facilitator superfamily ...		Lus10033271 [exp]	3.2	0.8229
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10009147 [exp]	3.5	0.8175
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10014100 [exp]	4.5	0.8255
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10012008 [exp]	4.6	0.8138
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10029403 [exp]	6.6	0.7803
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10027056 [exp]	8.5	0.8284
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022220 [exp]	10.2	0.7675
AT4G33480			unknown protein		Lus10003851 [exp]	10.6	0.7915

Compare expression of checked genes

Lus10039241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.