Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49055 71 / 6e-15 unknown protein AT1G24560 47 / 9e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027489 [exp] 184 / 1e-56 AT3G49055 244 / 3e-75 unknown protein Lus10025844 [exp] 62 / 1e-11 AT1G24560 750 / 0.0 unknown protein Lus10038257 [exp] 62 / 1e-11 AT1G24560 736 / 0.0 unknown protein Lus10029143 [exp] 51 / 4e-08 AT1G24560 613 / 0.0 unknown protein Lus10013022 [exp] 48 / 5e-07 AT1G24560 624 / 0.0 unknown protein Lus10021563 [exp] 40 / 4e-05 AT3G49055 55 / 1e-10 unknown protein Lus10011651 [exp] 39 / 8e-05 AT3G49055 47 / 9e-08 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G146100 [exp] 99 / 9e-25 AT3G49055 191 / 1e-54 unknown protein Potri.010G049400 [exp] 54 / 4e-09 AT1G24560 642 / 0.0 unknown protein Potri.008G184600 [exp] 50 / 7e-08 AT1G24560 302 / 2e-97 unknown protein Potri.008G183800 [exp] 50 / 7e-08 AT1G24560 691 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039244 pacid=23175514 polypeptide=Lus10039244 locus=Lus10039244.g ID=Lus10039244.BGIv1.0 annot-version=v1.0 ATGTTCGGCAGAGATCAAAGAAGCCGAGGTAGAAGCAGGAAGGTGGATGAAGCTTGCGAGTTAGAAATGGAAGCTGGGAAGAAAGAGGTTGCAGAACGGG ACAAAGTGGTTTCGATCTTGGAGCGTGAACTGGAGAAGACAAGGACTGCGCTGGGGATATCGAACGGCAAGCTTAAACTGAAGGAAGAGGTTGCAGCTGC AGCCATGGCTGCTCAGAAATCGGCCGAGCAGTCCCTGCGGCTGGCTGATATCAGGGCTACCGAGTTCCGTAACAGGATGGAGGAGCTGAGTAGACAACTG GAAGCAATCGATAGTGGAAATCGAGATCGAAGGAAAGTTAGGCATAGGTGTTGGCCATGGCAGAGTTTGAGAGATAGCATAAACAATGCTGGACCTCCGC TTCCAGAAATCCAAGCTTTGCTCCCTTAG
AA sequence Show only first row Show all	>Lus10039244 pacid=23175514 polypeptide=Lus10039244 locus=Lus10039244.g ID=Lus10039244.BGIv1.0 annot-version=v1.0 MFGRDQRSRGRSRKVDEACELEMEAGKKEVAERDKVVSILERELEKTRTALGISNGKLKLKEEVAAAAMAAQKSAEQSLRLADIRATEFRNRMEELSRQL EAIDSGNRDRRKVRHRCWPWQSLRDSINNAGPPLPEIQALLP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49055			unknown protein		Lus10039244 [exp]	0	1
AT2G26600			Glycosyl hydrolase superfamily...		Lus10006659 [exp]	3.6	0.8027
AT4G12010			Disease resistance protein (TI...		Lus10015650 [exp]	4.5	0.7478
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10029916 [exp]	9.9	0.8019
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10000864 [exp]	18.5	0.7653
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Lus10034140 [exp]	19.7	0.7806
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	20.8	0.7729
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10005749 [exp]	22.5	0.7679
					Lus10030083 [exp]	29.7	0.7496
AT1G13310			Endosomal targeting BRO1-like ...		Lus10034281 [exp]	32.8	0.7289
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	34.8	0.7573

Compare expression of checked genes

Lus10039244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.