Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45910 556 / 0 U-box domain-containing protein kinase family protein (.1) AT3G49060 511 / 2e-169 U-box domain-containing protein kinase family protein (.1.2) AT5G61560 286 / 4e-84 U-box domain-containing protein kinase family protein (.1.2) AT4G25160 286 / 9e-84 U-box domain-containing protein kinase family protein (.1) AT5G51270 285 / 1e-83 U-box domain-containing protein kinase family protein (.1) AT5G57035 268 / 9e-78 U-box domain-containing protein kinase family protein (.1) AT5G61550 263 / 2e-75 U-box domain-containing protein kinase family protein (.1.2) AT2G19410 256 / 2e-73 U-box domain-containing protein kinase family protein (.1) AT5G65500 242 / 2e-68 U-box domain-containing protein kinase family protein (.1) AT1G72760 219 / 5e-61 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027490 [exp] 1377 / 0 AT3G49060 514 / 2e-171 U-box domain-containing protein kinase family protein (.1.2) Lus10036362 [exp] 559 / 0 AT3G49060 895 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10014772 [exp] 556 / 0 AT3G49060 901 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Lus10036359 [exp] 410 / 5e-131 AT2G45910 598 / 0.0 U-box domain-containing protein kinase family protein (.1) Lus10018835 [exp] 380 / 2e-119 AT2G45910 522 / 4e-174 U-box domain-containing protein kinase family protein (.1) Lus10036363 [exp] 358 / 4e-112 AT2G45910 528 / 9e-178 U-box domain-containing protein kinase family protein (.1) Lus10016557 [exp] 354 / 5e-109 AT2G45910 508 / 3e-168 U-box domain-containing protein kinase family protein (.1) Lus10040825 [exp] 350 / 1e-107 AT2G45910 496 / 1e-163 U-box domain-containing protein kinase family protein (.1) Lus10024212 [exp] 217 / 2e-59 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G143100 [exp] 797 / 0 AT3G49060 706 / 0.0 U-box domain-containing protein kinase family protein (.1.2) Potri.002G160200 [exp] 459 / 3e-148 AT2G45910 650 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.014G084900 [exp] 432 / 5e-138 AT2G45910 857 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.002G160300 [exp] 394 / 4e-125 AT2G45910 559 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.001G239100 [exp] 332 / 9e-102 AT2G45910 473 / 6e-156 U-box domain-containing protein kinase family protein (.1) Potri.009G030400 [exp] 320 / 3e-96 AT2G45910 398 / 5e-126 U-box domain-containing protein kinase family protein (.1) Potri.006G147000 [exp] 261 / 2e-75 AT5G57035 674 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.004G233000 [exp] 260 / 1e-74 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.007G011500 [exp] 226 / 5e-64 AT5G65500 575 / 0.0 U-box domain-containing protein kinase family protein (.1) Potri.018G061600 [exp] 219 / 2e-60 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10039245 pacid=23175528 polypeptide=Lus10039245 locus=Lus10039245.g ID=Lus10039245.BGIv1.0 annot-version=v1.0 ATGGGGAGCGTCGAGTCGGATACAGAGGAGGCGATTTACGTGGCGGTGGGGAGGAACTCCGAGGAGAGCAAGTCGACGTTGCTGTGGACAGTCCGGAACT TCCCAGGGAAGAATATTTGCCTCCTCCACGTCCATCAACCTCCTGCAAGTCTCGCCGTTCGTTTCTCAGACAGGCAGCTAGCTGTTGTTAACAAAGCTGT TAAACATGAAGATAATGGATTGGACGAGTTGGAGAGGATAAAGATGGATGAAGTGTTGAATCAATGCTTTCTTATTCTTGCTCAGGAAGGGGTTGAACCG AATAAAGTGTGGATCAAGGCGAGGAGTATTGAGGAAGGGATAATCGAGATTGTTGATTGTTATGAAGTGAAGTGGCTTGTCATGGGCGCAGCAGCTGATA AGTACTACTCAAAGAAATTAACTGAGGTGAAGTCCAAGAAAGCTGCATTTGTGTGCCAACATGCTGCCATTTTCTGTCATATCTGGTTTGTTTGCAATGG TCGTCTCATCTACACTAGGGAAGGTAGAAATGACACATACGAGACAGAGAATGATCTTCCATTGCTCCTGACTTATTCAGATTCCGTATCTGCGTCGCCA GAGAGTTTCAAACCAAAATCTGTGTCAGGATCTGATATGTCACCAGATGAGGTTGACGATGCTTATGGAATTGAAGGTTTATTAAGAAAGTTTGACGACT GTAGCTTGGACATTCATCAACCGCTTGAAATGGCACTGCCATTGCTTGAGTATGAGTTCTTGCCAACCAAAAGAAAGTTTGGATCTCCTGGAGTATATAT CATCTGTGGCCTGTTTCTTTTTATGGATGTGGAATCAGAGTCAGAAGCACATAGTTACTTTCCGGATCAAGCAGTTCTTGAGTCCATGTTGGTCTATTAC CTTTTGCAGGCGGTAGAGATCAGGGACGATACAGAAAAAGCAAGTACAAGTAGCTTAGAGGAATCAGTTATGGATACTTGTGACCTAAAGAAGCTGGCAT TTGAGGAGGTAGTTAAGCGATGGAAAGAGGAAGAGAATGCTATGGAGGCAAAATGCAAGGCAAAATCCTTTTCAAGGCCAAATTTTAACTGTATACAAAA ACAGGCAAAAGCACTAGAAAGCTTGTGCATCAAGGAAATTAGCCTGAGAAAAGAGATGGAGGAAACATTGGCTAGAGAAAAGAACGCCACAGAAAGGACG AGGAATCAACACGGCAAGTTCCTGAAAGAACTACAGTGGGTTAAGGAGCAGAATGCCATACTTGAAAAGCAGTTTGGAGAAGCGAATAGTGTGGTGCAGG AACTGGAGGAGAAGATCATGTCAGCTGTTGAACTTCTCATAAGTTTCAGGAAGAAGAGAGACGATTCCAGAGTGGAATGTGAAAATGCTAGAAGGGAAGT GAGAAGACTACATGAGTTGGGAAAAGTTGATACCACACGCTTATTCAGGTCAGAAATTCTCGATTTCTCCTTCAGCGAGATCAACGAGGCAACTAATGAG TTCGATCCGGCTTGGAAGATTCGAGAAGGAAGACACGGAACTACATATAAAGGCCTTCTTCGCCATGTTCATGTAGCCATCAAGATGTTGCCTTCTTATG GCTCTCAGCAAGAATTCCAAAATCGGGTGAAGATTCTGTGTAAGGTGAGGCATCCAAACCTTGTGACGTTGATTGGAACTTGCTTGGAAGGTAGATCGCT TGTCCTCGAGTACGCTAGAAATGGAAGCTTGGAAGATCGCATTTCCTGTAAAGCCAAATCATTGCCGCTAACTTGGCAAACCCGGTTACGGATCACTGCC GAAATATGCTCTGCTCTTATCTTCCTCCACCGCAACGATCCCTGCATCATCCACGGAAACCTAAAACCATCTAAAGTCCTCCTCGGAACGAACTTGGTCT GCAAGCTGAGCGATTTCGGCATGCATCTTTTAGTGAAAGAGAAGTCAAACCCCAATTTTGTATCCAACTACGTCGATCCAGAATACTTGGAGAATGGTAA TCTCACTCCAGAGTCGGATGTTTATTCATTCGGCATCCTCCTTCTATTCCTCCTCACTGCTAGACCAGTGTGGGCAGTAGTGAAAGACGTGCAATGCGCA TTAGAGAAAGAGAAGCTGGAAACCGTTTTGGATCAGAATGCCGGAGAGTGGCCAGTTGAGCTGGCGAAACCGTTGGCTGACTTGGCATTGAGGTGCTGCA ACGGAGACAAGGCGAATCGTCCTAAAATCTCGTCGGTATTAGCTCAGGTGCAGCAAATTTCTGAATTCGCAGCTGCAACTGATTCAGCAGCATCATGCTT GGATGCCAAGGAATCTCGCCGAGCTCCATCCCATTTTGTCTGCCCCATTTTCCAGGAAGTGATGCAGGACCCGCAGATAGCAGCGGACGGATTCACGTAC GAAGGAGACGCCATTAAGGGATGGTTGAAGAGCGGACACAACACTTCCCCTATGACGAATCTGAAAATGGAACACTGTAACTTGCTCCCTAACCATGCTC TCTACCAGGCTATTCAAGAGTGGCACCAGCAACACTGGTAA
AA sequence Show only first row Show all	>Lus10039245 pacid=23175528 polypeptide=Lus10039245 locus=Lus10039245.g ID=Lus10039245.BGIv1.0 annot-version=v1.0 MGSVESDTEEAIYVAVGRNSEESKSTLLWTVRNFPGKNICLLHVHQPPASLAVRFSDRQLAVVNKAVKHEDNGLDELERIKMDEVLNQCFLILAQEGVEP NKVWIKARSIEEGIIEIVDCYEVKWLVMGAAADKYYSKKLTEVKSKKAAFVCQHAAIFCHIWFVCNGRLIYTREGRNDTYETENDLPLLLTYSDSVSASP ESFKPKSVSGSDMSPDEVDDAYGIEGLLRKFDDCSLDIHQPLEMALPLLEYEFLPTKRKFGSPGVYIICGLFLFMDVESESEAHSYFPDQAVLESMLVYY LLQAVEIRDDTEKASTSSLEESVMDTCDLKKLAFEEVVKRWKEEENAMEAKCKAKSFSRPNFNCIQKQAKALESLCIKEISLRKEMEETLAREKNATERT RNQHGKFLKELQWVKEQNAILEKQFGEANSVVQELEEKIMSAVELLISFRKKRDDSRVECENARREVRRLHELGKVDTTRLFRSEILDFSFSEINEATNE FDPAWKIREGRHGTTYKGLLRHVHVAIKMLPSYGSQQEFQNRVKILCKVRHPNLVTLIGTCLEGRSLVLEYARNGSLEDRISCKAKSLPLTWQTRLRITA EICSALIFLHRNDPCIIHGNLKPSKVLLGTNLVCKLSDFGMHLLVKEKSNPNFVSNYVDPEYLENGNLTPESDVYSFGILLLFLLTARPVWAVVKDVQCA LEKEKLETVLDQNAGEWPVELAKPLADLALRCCNGDKANRPKISSVLAQVQQISEFAAATDSAASCLDAKESRRAPSHFVCPIFQEVMQDPQIAADGFTY EGDAIKGWLKSGHNTSPMTNLKMEHCNLLPNHALYQAIQEWHQQHW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49060			U-box domain-containing protei...		Lus10039245 [exp]	0	1
AT5G04480			UDP-Glycosyltransferase superf...		Lus10017452 [exp]	2.6	0.8047
					Lus10040028 [exp]	3.3	0.7720
AT2G17760			Eukaryotic aspartyl protease f...		Lus10041865 [exp]	7.9	0.7759
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10010973 [exp]	8.1	0.7917
AT3G09320			DHHC-type zinc finger family p...		Lus10010852 [exp]	8.5	0.7869
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10004779 [exp]	9.2	0.7587
AT1G69360			Plant protein of unknown funct...		Lus10036807 [exp]	9.2	0.7768
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10020769 [exp]	9.4	0.7767
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10023798 [exp]	11.0	0.7796
AT3G62900			CW-type Zinc Finger (.1)		Lus10040919 [exp]	12.2	0.8033

Compare expression of checked genes

Lus10039245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.