Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25610 372 / 1e-120 C2H2ZnF C2H2-like zinc finger protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027491 [exp] 1170 / 0 AT4G25610 446 / 2e-149 C2H2-like zinc finger protein (.1.2) Lus10014974 [exp] 625 / 0 AT4G25610 426 / 6e-143 C2H2-like zinc finger protein (.1.2) Lus10038856 [exp] 598 / 0 AT4G25610 392 / 4e-130 C2H2-like zinc finger protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G146300 [exp] 533 / 0 AT4G25610 386 / 6e-126 C2H2-like zinc finger protein (.1.2) Potri.012G143200 [exp] 528 / 5e-180 AT4G25610 400 / 2e-131 C2H2-like zinc finger protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039246 pacid=23175448 polypeptide=Lus10039246 locus=Lus10039246.g ID=Lus10039246.BGIv1.0 annot-version=v1.0 ATGCCAGTTGCGAAACTCAAAGCGGGCAACACTACAGATGTCATGAAATCAGAAGAGGGAAATGATTCCCTTGACACATTTATCAGGCAAGCAATGGGAA AGGAGCCTCTACTTTCCTTCCCAAGGACTAATGATAACCCAGTACAATGGATCCAGCTGCTTCAAGCTCTAGACCAGCAGCAAGATGGACCAGGTTGGCC TTTACTCACTCCTCTGAAGGTTCAGATGCAAAAATGTGACAAATGTTCTCGAGAGTTTTGTTCCTCTATCAACTATAGAAGGCACACACGGGTCCATCAC AGACTGAAAAAGCTTGACAAGGATACTACAAAAAACAGGCATCTACTTGGCGCCTTCTGGGAGAAGCTCTCCGAGGATGAGGCGAAGGAGGTATTGTCAT TCAAGGATGTGGCTTTGGAGGAATTGTCTGGATCTTCAATTATAAAGTTGCTGATGGCTCTTAATCGGAAGCAGGGATTTTCTCCTCTTCCACTCCACTG TTTGAGGGCTGGCATCACTCTTTCGGATATCATCCAAGGAAGATTTAGGTATCCTTTATCGTCAGAGGAATTATTTAGCATCCTTGATGATGCCAGTGAA AAAACATTCCTATGTGGAGCAGCCATCTTAATGCAAAAGTATATTTTTGATGGGGAAGCCAGCAAAACTGGTCTTGAAACGAAAAACGTAGTTGCCTGCA CCAGCTTCCTGGTGGAACAGAAATTGGTTAATGCATGGCTTGCCGACAAGGATGCTGAAGCCCTGAGGTGTCAGAAGTTACTTGTGGAGGAGGAAGAAGC TGCTCAAAGAAGGGTGGCCTTGACCTGCATTTTCTTACAACTTTCCATCCTCGATGCTTCCAGGCAAGCTGAAATCTTGGAGCGTAAAAGGCAGAAGAAA TTGCGTCAAAAAGAACAAAGAGCTAAGGAGCAACAGCAAGAAGAGAAAGCTGATATTGAGGAGACCAATGATGCTACCTCGGAAGCCCCATCTGAGCCAC CCTGCTCGACAGCATGTAGTAATGATTTGCATGATGTGGAGATGCTGCAATATGCTTGTTCCTCGTCTTCAGAGCCATTAGAGCTCGCAAATCAAGATGG AGAGTTGGATTTGGAGAGTCAGATTAGATGCAGAGTTGATGCTGCTGATCAAGGGAGAGATCAAATCGCTGAAAGGCAGACAGTCCAGGGAAATAACCGT AGGCATGGAGCTCGGCGGCATATCTCCCAAAAATCACAATGGAATCAGGTGCCTAATGGTTTTCATGCCTCTGGCAACAAGTATAATGGTACCCAGGTGC ATGGAACTTACAGGGATTCGAGACCAGCAATGATGGTTAATGGGAACAGAAAATGGACCAGAAAACCCAGAATGGACAATGGTGGGGAAACTTCAAAACC CAGGTTAGAAAGGGAGGTAACAGTAAGCCAGCAAGATCACGCTAATAAACGACAGGTTCTGATTGGCTCTATTTCTGTTGCTATTGAAAGTACCGGCCAG CAGAATACTAACCAGACCGACCAGCAAGTTCCTAAGAAGAGCAACGTTCAGGACAAATACTCGAAGGCCGATCGGCCTCCGGTGAAGGAATGGAGACCCG TTAGCCGTAACGGATCCAAAGTACAACCGCAACAAGATGAAAATGGCATTAGAGAATCACATGTCGATGATGCCAGCCTAAGATTGTCCCCGGGACGAGA GTTGGCCAATGGTTCTCTCCTGCAACATGGCCATCTGCACCCTGAAAGATTCCAGCTCTCATGCCAAGCAGCAAAAGCTTTGCTTGCTGAAAGGTGGAAG CAAGCCATGGCAACCGAACATGTGAAATTGGTTCTGGTGCCGATCCTTGAACCATCGAAAGCTTGCTCAGGTGGTGTTCAGAAAAATGGATATGTCGGAG GTACAGTGATGTCGTCGGATGTTGATGCTAAAGCATCGGAGGGAACATCGGTTGATGTCGGTTATGGTGGTGTCAAGGCCGGTAAGTTTAGAGGAAGACC AGACAAAGGTGTGAAGCTAAAGTACATACCGAAACAAAGAACGTTGAGCTAG
AA sequence Show only first row Show all	>Lus10039246 pacid=23175448 polypeptide=Lus10039246 locus=Lus10039246.g ID=Lus10039246.BGIv1.0 annot-version=v1.0 MPVAKLKAGNTTDVMKSEEGNDSLDTFIRQAMGKEPLLSFPRTNDNPVQWIQLLQALDQQQDGPGWPLLTPLKVQMQKCDKCSREFCSSINYRRHTRVHH RLKKLDKDTTKNRHLLGAFWEKLSEDEAKEVLSFKDVALEELSGSSIIKLLMALNRKQGFSPLPLHCLRAGITLSDIIQGRFRYPLSSEELFSILDDASE KTFLCGAAILMQKYIFDGEASKTGLETKNVVACTSFLVEQKLVNAWLADKDAEALRCQKLLVEEEEAAQRRVALTCIFLQLSILDASRQAEILERKRQKK LRQKEQRAKEQQQEEKADIEETNDATSEAPSEPPCSTACSNDLHDVEMLQYACSSSSEPLELANQDGELDLESQIRCRVDAADQGRDQIAERQTVQGNNR RHGARRHISQKSQWNQVPNGFHASGNKYNGTQVHGTYRDSRPAMMVNGNRKWTRKPRMDNGGETSKPRLEREVTVSQQDHANKRQVLIGSISVAIESTGQ QNTNQTDQQVPKKSNVQDKYSKADRPPVKEWRPVSRNGSKVQPQQDENGIRESHVDDASLRLSPGRELANGSLLQHGHLHPERFQLSCQAAKALLAERWK QAMATEHVKLVLVPILEPSKACSGGVQKNGYVGGTVMSSDVDAKASEGTSVDVGYGGVKAGKFRGRPDKGVKLKYIPKQRTLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10039246 [exp]	0	1
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	5.2	0.8585
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Lus10040200 [exp]	7.4	0.8345
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012076 [exp]	9.4	0.8407
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10033090 [exp]	14.4	0.8318
AT1G48490			Protein kinase superfamily pro...		Lus10031906 [exp]	15.4	0.8373
AT2G21630			Sec23/Sec24 protein transport ...		Lus10043359 [exp]	17.5	0.8335
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028093 [exp]	19.0	0.8343
AT1G55750			BSD domain (BTF2-like transcri...		Lus10020465 [exp]	19.0	0.7956
AT5G56240			unknown protein		Lus10008344 [exp]	19.7	0.7859
AT1G22870			Protein kinase family protein ...		Lus10030346 [exp]	22.2	0.7879

Compare expression of checked genes

Lus10039246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.