Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11840 290 / 1e-98 Protein of unknown function (DUF1230) (.1) AT5G67370 146 / 6e-42 Protein of unknown function (DUF1230) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027492 [exp] 239 / 1e-80 AT5G11840 155 / 3e-48 Protein of unknown function (DUF1230) (.1) Lus10011087 [exp] 149 / 7e-43 AT5G67370 388 / 6e-136 Protein of unknown function (DUF1230) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G229600 [exp] 343 / 1e-119 AT5G11840 303 / 4e-104 Protein of unknown function (DUF1230) (.1) Potri.007G052500 [exp] 146 / 4e-42 AT5G67370 391 / 3e-137 Protein of unknown function (DUF1230) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06799 [flax] [poplar] DUF1230 Conserved in the green lineage and diatoms 27
Representative CDS sequence Show only first row Show all	>Lus10039247 pacid=23175711 polypeptide=Lus10039247 locus=Lus10039247.g ID=Lus10039247.BGIv1.0 annot-version=v1.0 ATGGAGAAGCTGATCCTTCTTCATCATCCTCCGCCGCCGCCGCCACACGCCTTCTTCCGATCAAACTCAAACCTCCTCCTTCTCTTTCCCCCGGCAGCCA ATTACTTCCCCAGATTCACTCGTCGCCGCGGCGGTCGATCATTCGCCGGAGTTATACCGTCGGCGGCTTTCAGAAATGGAAGCGATGCTCCTGATCAAAC GGGGTGTCCCGTTCCTGTTGATCAACAACCGATAAACGAGTACCAGTCTCTGTCGACGTCGTTCCCTTTCTCCTGGGCGTCCGGAGATATCCTACAGTAC TGCGGTCGGCTATTCGTCACCGGAGCATCTTTCGCTCTGTTCGTGGGCCTCCCCGTGGCCTGGTTTGGTTCGGTCGGCCCGCAATACGACCCGCTGAGGC CCCTTTCTGCCGCCGTTTCGAGTGGGATACTGGTGGTTAGTCTGGCTGTTTTGAGGATGTATTTGGGCTGGGCTTACGTCGGGAACCGTTTACTCAGCGC CACCGTCGAGTATGAAGAAACCGGTTGGTACGACGGTCAGATATGGGTGAAGACTGCAGAAGTGTTGACTAGAGACCGGCTGCTTGGTTCCATTACTGTG AAGCCAGTACTAAGCAGACTGAAGAACACTCTTGTGACTCTAGCGGCGATGCTTGTTGCTTGTGTTCTTCTCTTCATCAGTTTAGAGAGGGAGGCTATGG ATTCCAGCAGAATCTCTGAAGCAGCTGGAGGTGGTAGAGCTGTGTCTGGAGCTTACAACGATGATTCGGCCAGATCGTTCGAGCCGGATGCTTTCTGTGG TGAACCAAGTGAAACAATGTGA
AA sequence Show only first row Show all	>Lus10039247 pacid=23175711 polypeptide=Lus10039247 locus=Lus10039247.g ID=Lus10039247.BGIv1.0 annot-version=v1.0 MEKLILLHHPPPPPPHAFFRSNSNLLLLFPPAANYFPRFTRRRGGRSFAGVIPSAAFRNGSDAPDQTGCPVPVDQQPINEYQSLSTSFPFSWASGDILQY CGRLFVTGASFALFVGLPVAWFGSVGPQYDPLRPLSAAVSSGILVVSLAVLRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLTRDRLLGSITV KPVLSRLKNTLVTLAAMLVACVLLFISLEREAMDSSRISEAAGGGRAVSGAYNDDSARSFEPDAFCGEPSETM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11840			Protein of unknown function (D...		Lus10039247 [exp]	0	1
AT1G64680			unknown protein		Lus10001667 [exp]	1.0	0.9798
AT5G52420			unknown protein		Lus10039248 [exp]	1.7	0.9687
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Lus10013448 [exp]	2.4	0.9687
AT2G23180		CYP96A1	"cytochrome P450, family 96, s...		Lus10025677 [exp]	5.7	0.9432
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10001278 [exp]	6.7	0.9535
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10040981 [exp]	6.9	0.9419
AT1G73885			unknown protein		Lus10034345 [exp]	6.9	0.9555
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10002078 [exp]	7.9	0.9525
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10028299 [exp]	9.9	0.9455
AT5G13720			Uncharacterised protein family...		Lus10029480 [exp]	10.0	0.9330

Compare expression of checked genes

Lus10039247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.