Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52420 173 / 1e-53 unknown protein AT5G23920 116 / 2e-31 unknown protein AT1G27990 100 / 3e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037043 [exp] 107 / 9e-28 AT1G27990 306 / 2e-105 unknown protein Lus10015763 [exp] 107 / 1e-27 AT1G27990 302 / 5e-104 unknown protein Lus10039249 [exp] 101 / 5e-26 AT5G52420 160 / 2e-49 unknown protein Lus10027495 [exp] 98 / 9e-25 AT5G52420 159 / 8e-49 unknown protein Lus10027493 [exp] 75 / 4e-17 AT5G52420 52 / 4e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G146400 [exp] 209 / 2e-67 AT5G52420 259 / 3e-87 unknown protein Potri.012G143300 [exp] 125 / 2e-35 AT5G52420 126 / 3e-36 unknown protein Potri.001G059500 [exp] 100 / 4e-25 AT1G27990 308 / 7e-106 unknown protein Potri.003G168400 [exp] 100 / 1e-24 AT1G27990 318 / 5e-109 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039248 pacid=23175489 polypeptide=Lus10039248 locus=Lus10039248.g ID=Lus10039248.BGIv1.0 annot-version=v1.0 ATGTCAGGAGGAGTCGGGCCAAGCGCAGACATTTCCCTACCGAAAGACCAACCCGAATCCGAACAAGGCCACAAGCTGATACAAGACCACCACCCACCGA AACCCAAACAACAATCAATAACAATCTTAAGCTTCTACCAGCTGAATTCACTTGCAGCAATCCTAATCCTAGCATCAAGCGGATTAGTCCCGATCTCCGA TTTCGCCTTCGTAATCTTCTCCTTCCTCTACATCTTCCTCCTCTCCAAATTCGCCTTCCCGCCCTTACCCAAAGACTCCTCCTCCTCGGGATCCTCCGGC ATCGTCAACAAGGGGAAGCTCTTCCGCCTCTACGTGTTCGTCAGCTTCCTCATCGGCACAATCCTCCCCGTCGTGTACATCCTGCAAGGGATGCTCCAGG GAGACAAGGACGGGATCAAGGCGGCGGCCCCTCACGTGTTCCTCCTGGCGAGCCAGCTGTTCATGGAAGGGGTGGCGATGTCGGGGGAGAGATTCTCGCT TCCTGTGGGGATATTCGTGCCGGTGTCTTACAATTCGAGGAGGATGTTTAGCTTGGCGGAGTGGATGAGGAGCGAATTCGAGAAATCGGAAGGAGTTGAT GGCGGAGGGGGGGAGAGGAGGTTGTGGTTTGGGAGAGGGTTGGCGGTGGCGAATATGGGGTTTTGGGGGTTTAATCTGTTTGGGTTTCTGTTGCCGGTGG CGGTTCCGATTTGTATGAAGAAGTATTACTCTGCTTCTCTCCAGATTAAGGCCTCCAAAGATTGA
AA sequence Show only first row Show all	>Lus10039248 pacid=23175489 polypeptide=Lus10039248 locus=Lus10039248.g ID=Lus10039248.BGIv1.0 annot-version=v1.0 MSGGVGPSADISLPKDQPESEQGHKLIQDHHPPKPKQQSITILSFYQLNSLAAILILASSGLVPISDFAFVIFSFLYIFLLSKFAFPPLPKDSSSSGSSG IVNKGKLFRLYVFVSFLIGTILPVVYILQGMLQGDKDGIKAAAPHVFLLASQLFMEGVAMSGERFSLPVGIFVPVSYNSRRMFSLAEWMRSEFEKSEGVD GGGGERRLWFGRGLAVANMGFWGFNLFGFLLPVAVPICMKKYYSASLQIKASKD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52420			unknown protein		Lus10039248 [exp]	0	1
AT5G11840			Protein of unknown function (D...		Lus10039247 [exp]	1.7	0.9687
AT1G64680			unknown protein		Lus10001667 [exp]	2.0	0.9612
AT1G70580		GGT2, AOAT2	GLUTAMATE:GLYOXYLATE AMINOTRAN...		Lus10026692 [exp]	4.1	0.9225
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10017338 [exp]	4.9	0.9467
AT1G52190			Major facilitator superfamily ...		Lus10038616 [exp]	7.7	0.9238
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10040981 [exp]	8.0	0.9333
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10021824 [exp]	8.1	0.9378
AT4G02920			unknown protein		Lus10029640 [exp]	8.5	0.9365
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Lus10013448 [exp]	11.0	0.9399
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025415 [exp]	12.4	0.9276

Compare expression of checked genes

Lus10039248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.