Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52420 145 / 2e-43 unknown protein AT5G23920 111 / 3e-30 unknown protein AT1G27990 84 / 1e-19 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027495 [exp] 322 / 2e-113 AT5G52420 159 / 8e-49 unknown protein Lus10039248 [exp] 129 / 8e-37 AT5G52420 212 / 8e-69 unknown protein Lus10037043 [exp] 84 / 2e-19 AT1G27990 306 / 2e-105 unknown protein Lus10015763 [exp] 83 / 2e-19 AT1G27990 302 / 5e-104 unknown protein Lus10027493 [exp] 56 / 3e-10 AT5G52420 52 / 4e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G146400 [exp] 155 / 4e-47 AT5G52420 259 / 3e-87 unknown protein Potri.001G059500 [exp] 80 / 8e-18 AT1G27990 308 / 7e-106 unknown protein Potri.012G143300 [exp] 78 / 8e-18 AT5G52420 126 / 3e-36 unknown protein Potri.003G168400 [exp] 78 / 5e-17 AT1G27990 318 / 5e-109 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039249 pacid=23175696 polypeptide=Lus10039249 locus=Lus10039249.g ID=Lus10039249.BGIv1.0 annot-version=v1.0 ATGGCGGACAACAACAACGTTCCTCGAGCAAAATCAATCCTCCTAAACCCAATCCAAATCTTCTGCCTTGTCATTTCCATCCTCCTCGCCGGAACCTCCT CCGTAACCCTACACCACCCACTCTTCGTCATCTTCTCCGCAGCCTACGCATACTTCCTCTCCAAAATCTCCTTCCCGCTCAACTCCACTCCCAACGACTC CGTCTTCTCCCGCAGCAACAAGCTCCTCTCCAATTACGTCCTCGTCGGCGGAGTCGTCGGCCTCTTCCTCCCCGCTGCCTACATCCTCCTCAGCGGAGAA TCCGTCAGACTCGCGGCGGCGCCGCATCTCTTCCTGCTGGCGAGCCAGGTGTTCATGGAAGGGGTGTCGTTTGCCGTTGGGGTTTCGGTTCCGGTTAGAG CCTTTGTTCCCGTTTTCTACAATTCGAGGAGGATTTTCAGTATTTTGGAGTGGATTGAGTTCGAGTTTCGGGAATCCGGCGGCGGTGGTGGGATTTTGGG GAAGGTGTTGGCGGTGGCGAATTTGGGGTTCTGGGGGTATAATTTGTTTGGGTTTTTGTTGCCTGTTTATCTTCCTAGAGTTTTCAGGAGGTATTACGGT GCTTCTTCAACTGCTCAGTGA
AA sequence Show only first row Show all	>Lus10039249 pacid=23175696 polypeptide=Lus10039249 locus=Lus10039249.g ID=Lus10039249.BGIv1.0 annot-version=v1.0 MADNNNVPRAKSILLNPIQIFCLVISILLAGTSSVTLHHPLFVIFSAAYAYFLSKISFPLNSTPNDSVFSRSNKLLSNYVLVGGVVGLFLPAAYILLSGE SVRLAAAPHLFLLASQVFMEGVSFAVGVSVPVRAFVPVFYNSRRIFSILEWIEFEFRESGGGGGILGKVLAVANLGFWGYNLFGFLLPVYLPRVFRRYYG ASSTAQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52420			unknown protein		Lus10039249 [exp]	0	1
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10002773 [exp]	2.4	0.8503
AT2G14880			SWIB/MDM2 domain superfamily p...		Lus10013893 [exp]	4.0	0.8706
AT4G27620			unknown protein		Lus10028872 [exp]	7.3	0.8078
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10030989 [exp]	7.4	0.8092
AT1G73820			Ssu72-like family protein (.1)		Lus10024545 [exp]	8.0	0.8101
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10014952 [exp]	14.5	0.7857
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10041186 [exp]	21.0	0.8004
					Lus10040882 [exp]	29.4	0.8221
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041392 [exp]	31.8	0.7773
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10026638 [exp]	33.8	0.7939

Compare expression of checked genes

Lus10039249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.