Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63700 742 / 0 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT1G53570 365 / 2e-115 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT5G66850 310 / 2e-93 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G54960 246 / 3e-71 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G09000 244 / 7e-70 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT4G08500 234 / 7e-67 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT3G06030 230 / 6e-65 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G08470 215 / 2e-60 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G12020 214 / 3e-57 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT4G08480 209 / 6e-57 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027496 [exp] 1535 / 0 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10038858 [exp] 938 / 0 AT1G63700 668 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 831 / 0 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10032279 [exp] 766 / 0 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 765 / 0 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10000829 [exp] 378 / 2e-120 AT1G53570 537 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Lus10002096 [exp] 384 / 7e-117 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10019635 [exp] 318 / 1e-96 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10009339 [exp] 317 / 4e-96 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G146700 [exp] 1135 / 0 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 1098 / 0 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 849 / 0 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 848 / 0 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.007G106800 [exp] 393 / 7e-126 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.005G062500 [exp] 391 / 6e-125 AT1G53570 566 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.007G039800 [exp] 328 / 4e-101 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G135100 [exp] 314 / 2e-95 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 289 / 4e-85 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.002G129100 [exp] 281 / 2e-82 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10039250 pacid=23175502 polypeptide=Lus10039250 locus=Lus10039250.g ID=Lus10039250.BGIv1.0 annot-version=v1.0 ATGCCTCCTTGGTGGGGGAAGTCATCTTCGAAAGAAGGGAAGAAGAAAGGAACCAAGGAAAGTTTCATTGATTCCTTGCACCGGAGATTCAAGAGTCCGT CAGAGGGTAAACTAAGCAGCAGATCAGGAGGTTCTCGAAGACATTTGAGTGACGTAGTATTGGAGAAGGGATCAAAATCTCAACCAGGGACCAGATCACC ATCTCCTTCTAAAGATGTGTCTAGGTGTCAAAGTTTTGTCGAGAGGTCCAATGCCCAACCACTCCCTCTTCCTGGAGTTCATCCTGCAACAGTGAGACGT GTGGATTCTGAACTTGGTACAACCACGAAACCGCGTGTTGGGAAAGGCAGCAAGTCGTCGTTGTTTTCACCTTTGCCTAGACCGGCATGCATCCGTAACA GGTCAAACCGGGCTGATTTGGAAGGAGATTTGGCCACTGCTTCAGTCTCCAGTGCAAGTTCAGATGACATTGACGAACTTGTTGATCTTAATCAAACTAG TCATCAGGCAACTGCCAACAGCCCTTCAAGTGGGATGCTCAAGGATCGTTCCTCTACCGGGTCACTTTTGAAGCGAAGAGAAGCAAAGAAGAAACCAGCA GGGCTCCCTTTGCATAATCATACCACTCCGACATCACCAAACTGGAGACCTCTAAGCAGTCATGTGCTTAATCTGCAGGTCCCTCATCCCGGTGCTTTCT TTAGTGCACCCGACAGTTCAATGTCAAGTCCTTCGAGAAGTCCATTGAGAGGTTTTGGCACTGATCAGATTGCTAATTCTGCTATGTGGGCTGGGAAACC TTTCACTGACGTAACCTTACTTGGATCTGGCCACTGTTCTAGCCCTGGATCAGGTCAGAATTCGGGGCAAAATTCAATGGGAGGGGACATGACTGGCCAG TTATTCTGGCAACAAAGTAGAGGTAGTGCAGAATGTTCTCCAATACCTAGTCCTCGTATGGCTAGTCCAGGCCCCAGTTCTAGAGTCCAAAGTGGTGCTG TCACGCCCATCCATCCAAGAGCAGGAGGCGCAATCCTCGAGTCACAGACCAGCTGGCCTGAGGATGGGAAACAGCAAAGCCATCGGCTGCCACTTCCTCC TGGTACCATTTCCAATTCGTCCCCTTTCTCTCATCCCAATTCCGCAGCAACATCTCCATCTGTACCTAAAAGTCCAGGGAGGGCAGAAAACCCATTAAGC CCTGGATCACGTTGGAAAAAGGGGAAACTGCTAGGTAGAGGGACCTTTGGGGAGGTTTATGTTGGCTTTAACAGTGAAAGTGGTGAAATGTGTGCAATGA AGGAAGTGACTTTATTTTCAGATGATGCCAAGTCAAGGGAAAGTGCAAAGCAATTAATGCAGTATTACGGGTCAGAACAGGTTGAGGACAAACTTTACAT ATATCTGGAGTATGTATCCGGTGGGTCTATCCATAAAATTCTCCAGGAGTATGGTCAGTTGGGTGAGCTGGCAATTCGGAGTTACACCCAGCAAATCTTG TCAGGACTGGCATATTTACATTCAAAAAGCACAGTACATAGAGATATTAAAGGTCCAAACATTCTTGTGGATCCAAATGGTCGTGTTAAATTAGCAGATT TTGGGATGGCAAAGCATGTAAGAACAGACATATCTCAATACAATTATGGAGTTCCTCCTTTGAAGCCTTACCCGGTGTTTGCATTGCAGATCACTGGGCC GTCATGTCCACTATCTTTCAAGGGGAGCCCTTACTGGATGGCACCTGAGGTTATAAAAAACTCAAGTGGCTGCAACCTTGCTGTGGATATATGGAGTCTT GGATGTACTGTTCTTGAAATGGCTACAGCTAAACCACCATGGAGCCAGTATGAAGGGGTTGCTGCTTTGTTTAAGATCGGAAATAGTAAAGATCTCCCTG CGATTCCGGATCAACTGTCAGACGAAGGAAAAGATTTTGTAAGGCAATGCATGCAAAGGAACCCAGCGCACCGTCCTACTGCTGCTCAACTTTTGGACCA CCCATTCGTCAGATCTGCCGCACCTCTGGAAAGATCTTTCATCTTCCCTGAATCTACAGATCTGCCCAATGGAGTGGAAAACGGAGTGAAAGCTCTGGGA ATCAATCAAGCTAGAAACTTTACGACGCTGGATTCAGAAAGACTACTTGTTCATTCATCAAGAGTCCCAAAAAGTGGCTTTCACGCGAGTGATATCCACA TCCCAAGAAATAACATATCATGCCCAGTCTCACCCATTGGAAGTCCACTTTTGCATTCGAGATCCCCGCAGCATCTCAACGGGAGAATGTCTCCCTCACC TATAAATAGCCCCAGAACAACCTCAGGTGCATCAACCCCTCTTACAGGTGGTGCTGGTGCTATCCCTTTCAATCTCACAAAACACTCGGTTTACTTCCAA GAGGGTTTTGCAAACAACACATCAAAGCCCTCGAATGGTATCTTCCCAAATGGTGCCTTGTATCATGATGCGGCTCCCGATATATTTCGGGTCCCTCAAG GCGAGACTTACGACGGGCAGTCGGTATTGGCTGACCGGGTGTCTCGGCAGCTGATGAAGGATCATGCAAAGTTGCATTCCCCATTGGACCTTAGCCCCAA GTCTCCTTTGCCCAGCCGGACGAATGGTATCTAA
AA sequence Show only first row Show all	>Lus10039250 pacid=23175502 polypeptide=Lus10039250 locus=Lus10039250.g ID=Lus10039250.BGIv1.0 annot-version=v1.0 MPPWWGKSSSKEGKKKGTKESFIDSLHRRFKSPSEGKLSSRSGGSRRHLSDVVLEKGSKSQPGTRSPSPSKDVSRCQSFVERSNAQPLPLPGVHPATVRR VDSELGTTTKPRVGKGSKSSLFSPLPRPACIRNRSNRADLEGDLATASVSSASSDDIDELVDLNQTSHQATANSPSSGMLKDRSSTGSLLKRREAKKKPA GLPLHNHTTPTSPNWRPLSSHVLNLQVPHPGAFFSAPDSSMSSPSRSPLRGFGTDQIANSAMWAGKPFTDVTLLGSGHCSSPGSGQNSGQNSMGGDMTGQ LFWQQSRGSAECSPIPSPRMASPGPSSRVQSGAVTPIHPRAGGAILESQTSWPEDGKQQSHRLPLPPGTISNSSPFSHPNSAATSPSVPKSPGRAENPLS PGSRWKKGKLLGRGTFGEVYVGFNSESGEMCAMKEVTLFSDDAKSRESAKQLMQYYGSEQVEDKLYIYLEYVSGGSIHKILQEYGQLGELAIRSYTQQIL SGLAYLHSKSTVHRDIKGPNILVDPNGRVKLADFGMAKHVRTDISQYNYGVPPLKPYPVFALQITGPSCPLSFKGSPYWMAPEVIKNSSGCNLAVDIWSL GCTVLEMATAKPPWSQYEGVAALFKIGNSKDLPAIPDQLSDEGKDFVRQCMQRNPAHRPTAAQLLDHPFVRSAAPLERSFIFPESTDLPNGVENGVKALG INQARNFTTLDSERLLVHSSRVPKSGFHASDIHIPRNNISCPVSPIGSPLLHSRSPQHLNGRMSPSPINSPRTTSGASTPLTGGAGAIPFNLTKHSVYFQ EGFANNTSKPSNGIFPNGALYHDAAPDIFRVPQGETYDGQSVLADRVSRQLMKDHAKLHSPLDLSPKSPLPSRTNGI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10039250 [exp]	0	1
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10027496 [exp]	1.0	0.9468
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10034792 [exp]	1.4	0.9117
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10004490 [exp]	4.4	0.8266
AT4G02030			Vps51/Vps67 family (components...		Lus10041387 [exp]	6.9	0.8599
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10033335 [exp]	7.3	0.8516
AT3G63340			Protein phosphatase 2C family ...		Lus10000491 [exp]	9.2	0.8509
AT5G49530			SIN-like family protein (.1)		Lus10037936 [exp]	9.9	0.8702
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	10.4	0.8461
AT4G36210			Protein of unknown function (D...		Lus10028363 [exp]	11.5	0.8392
AT5G22450			unknown protein		Lus10004878 [exp]	13.0	0.8591

Compare expression of checked genes

Lus10039250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.