Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02260 676 / 0 Divalent ion symporter (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027497 [exp] 904 / 0 AT1G02260 719 / 0.0 Divalent ion symporter (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G146900 [exp] 694 / 0 AT1G02260 647 / 0.0 Divalent ion symporter (.1) Potri.012G144000 [exp] 620 / 0 AT1G02260 582 / 0.0 Divalent ion symporter (.1) Potri.017G141600 [exp] 602 / 0 AT1G02260 569 / 0.0 Divalent ion symporter (.1) Potri.017G141800 [exp] 553 / 0 AT1G02260 538 / 0.0 Divalent ion symporter (.1) Potri.017G141950 [exp] 301 / 4e-100 AT1G02260 263 / 2e-85 Divalent ion symporter (.1) Potri.017G141700 [exp] 145 / 3e-42 AT1G02260 140 / 7e-41 Divalent ion symporter (.1) Potri.017G141650 [exp] 89 / 5e-22 AT1G02260 64 / 5e-14 Divalent ion symporter (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [flax] [poplar] IT PF03600 [flax] [poplar] CitMHS Citrate transporter
Representative CDS sequence Show only first row Show all	>Lus10039251 pacid=23175571 polypeptide=Lus10039251 locus=Lus10039251.g ID=Lus10039251.BGIv1.0 annot-version=v1.0 ATGGCGATGGCATCATCAGCCAAAGTGGTACTAGGCTCAGTCGCCTTTGCAATCTTCTGGGTACTAGCTGTATTCCCAGCAGTCCCCTTTCTACCAATTG GAAGAACAGCAGGTTCCTTATTGGGAGCTATGCTAATGGTGATATTCCAGGTAATAACCCCTGACCAAGCCTATTCAGCAATCGATCTTCCCATCTTAGG TCTCCTCTTCGGAACCATGGTCGTCAGCGTTTATCTAGAACGAGCCGACATGTTCAAATACTTGGGAAAGTTGCTATCTTGGAAGAGCTTAGGGCCTAAA GATTTGCTTTTCAGGGTTTGTTTGGTATCAGCTGTTTCCAGTGCATTCTTCACTAACGATACCTCTTGTGTTGTTCTGACTGAGTTTGTTCTCAAAGTTG CTAGGCAGCATAATCTGCCACCTCACCCCTTTTTGTTGGCTTTGGCTTCCAGTGCTAATATTGGTTCTTCAGCTACTCCAATTGGGAATCCTCAGAATTT GGTTATAGCTGTTCAGAGTGGGATTTCATTTGGGGGGTTTTTGTTCGGCATTGTTCCTGCTATGGTGGTTGGTGTTGTTGTGAATGCTTTGGTTCTCATG TGTATGTATTGGAAGCTTCTGTCTTCTGTTTCTAAAGATGTGGAAGAAAATGGTGGTGAGGTTGTTTTCGATCATGAGGATGTCGATTTGCATCGATTCT CGCCTGCTACAATGTCTCACCAAAGCTTGAACTCTAGGGAAGAATCATCACCAAGTGTGAATGGTGGTGTGGAGAACACCACCTTGAGGAATCGGGTGGT GTCTTCTACTAATTCGGCAGAGAATGGCTCGAATGCATCGGATGTGGATGGATCATCATCGCCGGATGCATTCGATGGTGAGGATGATCCGTTTGAGAGC AAGTGGAAAAGGGTGTTGTGGAAGTCATGTGTTTACCTCATTACAATTGGTATGTTGGTGGCTTTGCTCATGGGTTTGAACATGTCATGGTCTGCAATCA CTGCTGCACTTGCTCTTGTGGTTCTCGATTTCCAAGATGCCCGCCCCAGCCTTGAGAAGGTGTCTTATTCCCTCCTCATATTCTTCTGTGGAATGTTCAT CACAGTTGATGGCTTCAACAAAACCGGAATCCCAAGCACCCTTTGGGATTTGATGGAGCCTTACGCCAAAATTGACCATCCAACTGGGATATTAGTCCTA GCCCTAGTCATACTTTGTCTCTCCAACTTGGCCTCTAACGTCCCAACCGTGCTACTGCTGGGAGCAAGAGTGGCAGCATCAGCAGCCGAGTTATCGAAAG AGGACGAGAAGAAGGCGTGGCTGATGCTGGCGTGGGTGAGCACTGTGGCTGGGAACTTGTCACCGTTGGGTTCTGCTGCGAACTTGATAGTGTGCGAACA AGCTAGGCGTGCTCCACAGTTTGGATACGACCTGTCGTTTTGGAAGCACCTGAAATTTGGCGTCCCTTCTACTCTTATAGTTACTGCTATTGGGTTGACA CTCATTAGATAA
AA sequence Show only first row Show all	>Lus10039251 pacid=23175571 polypeptide=Lus10039251 locus=Lus10039251.g ID=Lus10039251.BGIv1.0 annot-version=v1.0 MAMASSAKVVLGSVAFAIFWVLAVFPAVPFLPIGRTAGSLLGAMLMVIFQVITPDQAYSAIDLPILGLLFGTMVVSVYLERADMFKYLGKLLSWKSLGPK DLLFRVCLVSAVSSAFFTNDTSCVVLTEFVLKVARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIAVQSGISFGGFLFGIVPAMVVGVVVNALVLM CMYWKLLSSVSKDVEENGGEVVFDHEDVDLHRFSPATMSHQSLNSREESSPSVNGGVENTTLRNRVVSSTNSAENGSNASDVDGSSSPDAFDGEDDPFES KWKRVLWKSCVYLITIGMLVALLMGLNMSWSAITAALALVVLDFQDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSTLWDLMEPYAKIDHPTGILVL ALVILCLSNLASNVPTVLLLGARVAASAAELSKEDEKKAWLMLAWVSTVAGNLSPLGSAANLIVCEQARRAPQFGYDLSFWKHLKFGVPSTLIVTAIGLT LIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02260			Divalent ion symporter (.1)		Lus10039251 [exp]	0	1
AT1G67690			Zincin-like metalloproteases f...		Lus10036925 [exp]	16.9	0.7858
AT1G69400			Transducin/WD40 repeat-like su...		Lus10026051 [exp]	29.7	0.7808
AT5G12900			unknown protein		Lus10031249 [exp]	30.0	0.7728
AT1G67730		ATKCR1, YBR159,...	beta-ketoacyl reductase 1 (.1)		Lus10036940 [exp]	32.4	0.7296
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10014712 [exp]	44.5	0.7602
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10011329 [exp]	51.0	0.7851
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10043468 [exp]	54.0	0.7792
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Lus10031052 [exp]	54.7	0.7612
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Lus10037981 [exp]	55.4	0.7836
AT5G52950			unknown protein		Lus10027565 [exp]	68.0	0.7635

Compare expression of checked genes

Lus10039251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.