Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52430 307 / 8e-99 hydroxyproline-rich glycoprotein family protein (.1) AT4G25620 270 / 2e-84 hydroxyproline-rich glycoprotein family protein (.1) AT1G63720 151 / 9e-41 unknown protein AT1G76660 135 / 2e-34 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027498 [exp] 684 / 0 AT5G52430 348 / 2e-113 hydroxyproline-rich glycoprotein family protein (.1) Lus10032276 [exp] 209 / 3e-61 AT5G52430 265 / 8e-84 hydroxyproline-rich glycoprotein family protein (.1) Lus10024642 [exp] 209 / 4e-61 AT5G52430 261 / 2e-82 hydroxyproline-rich glycoprotein family protein (.1) Lus10028779 [exp] 167 / 2e-44 AT5G52430 191 / 6e-54 hydroxyproline-rich glycoprotein family protein (.1) Lus10017503 [exp] 163 / 1e-42 AT5G52430 183 / 5e-51 hydroxyproline-rich glycoprotein family protein (.1) Lus10016050 [exp] 124 / 1e-30 AT1G76660 438 / 5e-152 unknown protein Lus10025171 [exp] 121 / 8e-29 AT1G76660 420 / 1e-141 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144200 [exp] 600 / 0 AT4G25620 382 / 2e-128 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G102200 [exp] 237 / 6e-72 AT5G52430 232 / 2e-71 hydroxyproline-rich glycoprotein family protein (.1) Potri.003G129400 [exp] 220 / 2e-65 AT5G52430 193 / 1e-56 hydroxyproline-rich glycoprotein family protein (.1) Potri.002G001100 [exp] 146 / 4e-38 AT1G76660 487 / 1e-170 unknown protein Potri.005G260000 [exp] 138 / 2e-35 AT1G76660 453 / 7e-158 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039253 pacid=23175684 polypeptide=Lus10039253 locus=Lus10039253.g ID=Lus10039253.BGIv1.0 annot-version=v1.0 ATGGCCGCAGCTCATCTTGTCTCTGATTCCCAGTCCGAGATGAGAGGCGTCACTACGACCACCAACGCCACCGTCGATACCGTTAACGCTGCCGCCACCG CCATCGTCTCAGCCGAGTCACGTGTACAGCCTGCTGCCGTCCCGAAGAGAAGATGGGGAGGCTGTTGGAGTATGTACTGGTGCTTTGGTGCTCATAAAAG CGACAAACGAATTGGTCATGCTGTGCTTGTACCTGAACCAGAATCACAGAGAGTAGCACCTTCTTCCTCTGTCACTCAATCCCACTCAACTGCCGTCGTG CTTCCCTTCATTGCTCCTCCTTCCTCTCCAGCTTCGTTCCTTCAATCGGATCCTTCATCTGTCACTCAGTCACCAGCAGGAAAGTTGTCTCTGAATTCTC TCTCTGCCAATGCCTATTCACCTCGTGGACCTCCCTCCATGTTTGCTATAGGGCCCTATGCACATGAGACCCAGCTAGTGACACCGCCTGTGTTTTCCGC CTTCACCACTGAGCCATCCACTGCTCCTTTTACTCCTCCGCCGGAATCTGTTCAACTCACTACACCATCCTCTCCCGAGGTGCCATTTGCTCAGCTTCTG ACATCGTCTCTTGAACGTGCTCGGAGAAACAGCGGGCCCACTCCCAAATACGGATTCTCCAACTACGAATTCCCTCATGTATACCCAGGAAGCCCTGGTG CTCAACTCATCTCCCCAGGGTCAACTGTTTCATATTCAGGGACCTCTTCCCCTTTCCCTGACAGACACCCGGTTCTTGGGTTCCCTACAGGGGAAGCTCC GAAGCACATTGGCTATGAGCATTTCAATACTCGCAAATGGGGTTCGAGATTGGGTTCTGGATCTCTGACCCCAGATGGGGTAGGTCGAGGTTCAAGACTA GCTTCAGGAACCACAACTCCGGATGGCATTGGTCTGGGTTCAAGGCTAGCTTCAGGAACAACAACTCCGGATGGCATTGGTTTGGGTTCAAGGCTAGCTT CAGGAACAACAACTCCAGATGGCATTGGTCTGGGTTCAAGGCTAGCTTCAGGAACAACAACTCCAGATGGCATTGGTCTGGGTTCAAGGCTAGCTTCAGG AACTGTGACTCCAGACGGTATAGGGCTGGGTTCGAGGTTGGGTTCAGGAACTGTTACTCCAGACGGGGGAAGTATATATTCTAGGATGGGCTCAGGAGCT TTGACACCTGGCATTCAGGAAGGTGTCCTTTTAATGAACCCAGTCTTAGAAGCTGCACATCTTCCCCTCTTGCAAAATGGAGCCGCCAAAACTCATGAAG CCATGGTTGATCACAGAGTTTCGTTCGAGTTGAGCGGCGAAGACGTTGCACGGTGCCTCGAAAATAAGTCGATGGCTTCAAACAGAACCTTCCTAGAATC AGTGGATGATCACGGAGAAAGCGGCGAGAGCCTAATGAGGTCCGAAGTCCGTTTGCGCGTCGGCGATACTTCTTCGAACGGATCACCCGGCAAACCAACA TCAGGGGAAGTAGCCGAAGACGAGCCTTCTTTCAGAAGACAACGGTCCGTCACTCTTGGATCGATCAAAGAGTTCAACTTCGACAGCTCAAAGGGAGAAA CCATAGATAAATCGGAATGGTGGGCAAACGAAGCAATCGCTGGCAAGGAATCGAAACCTGCAAACGGGTGGAGCTTCTTTCCGATCCTACAGCCGGAGGT GAGTTGA
AA sequence Show only first row Show all	>Lus10039253 pacid=23175684 polypeptide=Lus10039253 locus=Lus10039253.g ID=Lus10039253.BGIv1.0 annot-version=v1.0 MAAAHLVSDSQSEMRGVTTTTNATVDTVNAAATAIVSAESRVQPAAVPKRRWGGCWSMYWCFGAHKSDKRIGHAVLVPEPESQRVAPSSSVTQSHSTAVV LPFIAPPSSPASFLQSDPSSVTQSPAGKLSLNSLSANAYSPRGPPSMFAIGPYAHETQLVTPPVFSAFTTEPSTAPFTPPPESVQLTTPSSPEVPFAQLL TSSLERARRNSGPTPKYGFSNYEFPHVYPGSPGAQLISPGSTVSYSGTSSPFPDRHPVLGFPTGEAPKHIGYEHFNTRKWGSRLGSGSLTPDGVGRGSRL ASGTTTPDGIGLGSRLASGTTTPDGIGLGSRLASGTTTPDGIGLGSRLASGTTTPDGIGLGSRLASGTVTPDGIGLGSRLGSGTVTPDGGSIYSRMGSGA LTPGIQEGVLLMNPVLEAAHLPLLQNGAAKTHEAMVDHRVSFELSGEDVARCLENKSMASNRTFLESVDDHGESGESLMRSEVRLRVGDTSSNGSPGKPT SGEVAEDEPSFRRQRSVTLGSIKEFNFDSSKGETIDKSEWWANEAIAGKESKPANGWSFFPILQPEVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52430			hydroxyproline-rich glycoprote...		Lus10039253 [exp]	0	1
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Lus10009419 [exp]	2.2	0.8017
AT2G03120		ATSPP	signal peptide peptidase (.1)		Lus10006852 [exp]	5.3	0.7583
AT3G62220			Protein kinase superfamily pro...		Lus10004524 [exp]	9.5	0.7705
AT1G65320			Cystathionine beta-synthase (C...		Lus10037535 [exp]	11.0	0.7785
AT3G42050			vacuolar ATP synthase subunit ...		Lus10020335 [exp]	13.4	0.7438
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001435 [exp]	14.4	0.7769
AT5G10290			leucine-rich repeat transmembr...		Lus10023146 [exp]	14.8	0.7439
AT4G36660			Protein of unknown function (D...		Lus10007156 [exp]	14.9	0.7405
AT2G19760		PRF1, PFN1	profilin 1 (.1)		Lus10011138 [exp]	16.2	0.7785
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	17.4	0.7553

Compare expression of checked genes

Lus10039253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.