Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52440 153 / 4e-45 HCF106 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1) AT5G28750 54 / 6e-09 Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027499 [exp] 317 / 8e-104 AT4G14147 254 / 2e-81 protein binding (.1.2) Lus10006588 [exp] 59 / 2e-10 AT5G28750 130 / 3e-39 Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Lus10015910 [exp] 53 / 3e-08 AT5G28750 103 / 2e-28 Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144300 [exp] 179 / 3e-55 AT5G52440 216 / 5e-70 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Potri.015G147100 [exp] 178 / 9e-55 AT5G52440 209 / 2e-67 HIGH CHLOROPHYLL FLUORESCENCE 106, Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Potri.013G040900 [exp] 61 / 2e-11 AT5G28750 97 / 5e-26 Bacterial sec-independent translocation protein mttA/Hcf106 (.1) Potri.005G053400 [exp] 61 / 3e-11 AT5G28750 117 / 3e-34 Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02416 [flax] [poplar] TatA_B_E mttA/Hcf106 family
Representative CDS sequence Show only first row Show all	>Lus10039254 pacid=23175488 polypeptide=Lus10039254 locus=Lus10039254.g ID=Lus10039254.BGIv1.0 annot-version=v1.0 ATGGCTATGGCGACTCTCATTACCACCCCAGCTACTACAACTTCAACTAGAGCAAGATTGCTTCTCCATCCTCAAAGGCCGCCATACTCGGCTCCAAATT ACTGCCCGAGCTTTGGCCTCTCCAGCTCGATTCCCCAACAGTGTTCATCGACTCTCTCTCAACGGAATGGGTTAAAGCTGATGGATATCCCAATTGCTAC GAAGTTTCTGCATCATAGAGGAAGGAAAGGGAAGCGTAAGGGTAAGTTCGACGCTCGTGCTTCTTTGTTTGGAGTTGGAGCTCCTGAAGCTTTGGTGATT GGAGTTGTGGCCTTATTGGTCTTTGGCCCCAAAGGTCTTGCCGAGGTAGCACGCAATTTAGGCAAGACTTTACGAGCATTTCAGCCCACCATTAGAGAAC TCCAGGAAGTTTCTAGGGAATTCAAAAGCACCCTTGAGAAGGAGATCGGTCTAGATGGCATTACGAATTCTACAACTCAAACAACAAATTTATCCAACAG CACACCTACCGCTCCTGCCCCACCCTCCCCGCCAGTTACGAGCTCTGCAGATTCTCCAGCTGAATCTGAACCCAATGGTACTCCTACTGCAGACAAGGCA TATACAAGTGAGGAGTACTTGAAAATCACGGAAGAGCAGCTGAAGAAGGCATCCTCTAGCCAACAACAAGCCGAGGTACCGGCAGCAGTCGAGAGCCAGC CAGATGCTAAAGCCACAGAAGAGAATGGCGAGCAACAACAGGTGCAGACACTTGTTGCGGCAGAGAGCCAAGTTGCACCACCTCAAGCTCAACCAACAGC AGCGAATGGAGAAACTGCTGCGGAAATGCCTGAATCAGTAAAACCAGAAAGTGAGTCATGA
AA sequence Show only first row Show all	>Lus10039254 pacid=23175488 polypeptide=Lus10039254 locus=Lus10039254.g ID=Lus10039254.BGIv1.0 annot-version=v1.0 MAMATLITTPATTTSTRARLLLHPQRPPYSAPNYCPSFGLSSSIPQQCSSTLSQRNGLKLMDIPIATKFLHHRGRKGKRKGKFDARASLFGVGAPEALVI GVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQEVSREFKSTLEKEIGLDGITNSTTQTTNLSNSTPTAPAPPSPPVTSSADSPAESEPNGTPTADKA YTSEEYLKITEEQLKKASSSQQQAEVPAAVESQPDAKATEENGEQQQVQTLVAAESQVAPPQAQPTAANGETAAEMPESVKPESES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10039254 [exp]	0	1
AT4G24175			unknown protein		Lus10013559 [exp]	1.0	0.9370
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10033809 [exp]	2.8	0.8989
AT5G50110			S-adenosyl-L-methionine-depend...		Lus10043465 [exp]	4.5	0.8931
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10040477 [exp]	4.7	0.8914
AT4G28590		MRL7	Mesophyll-cell RNAi Library li...		Lus10022899 [exp]	5.7	0.9118
AT4G20130		PTAC14	plastid transcriptionally acti...		Lus10006942 [exp]	6.5	0.9166
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	6.8	0.8650
AT5G50250		CP31B	chloroplast RNA-binding protei...		Lus10017962 [exp]	7.7	0.8886
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10039049 [exp]	8.8	0.9023
AT1G11750		NCLPP6, NCLPP1,...	NUCLEAR-ENCODED CLPP 1, CLP pr...		Lus10011282 [exp]	9.2	0.8709

Compare expression of checked genes

Lus10039254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.