Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23940 206 / 2e-65 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) AT5G01210 104 / 6e-27 HXXXD-type acyl-transferase family protein (.1) AT2G39980 102 / 4e-26 HXXXD-type acyl-transferase family protein (.1) AT5G42830 93 / 9e-23 HXXXD-type acyl-transferase family protein (.1) AT5G07850 87 / 9e-21 HXXXD-type acyl-transferase family protein (.1) AT5G07860 82 / 6e-19 HXXXD-type acyl-transferase family protein (.1) AT5G07870 80 / 3e-18 HXXXD-type acyl-transferase family protein (.1) AT5G67150 76 / 1e-16 HXXXD-type acyl-transferase family protein (.1) AT3G50270 64 / 1e-12 HXXXD-type acyl-transferase family protein (.1) AT3G50280 60 / 4e-11 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039256 [exp] 293 / 4e-99 AT5G23940 576 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10027500 [exp] 288 / 2e-97 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 108 / 2e-28 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 96 / 8e-24 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 96 / 8e-24 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 85 / 8e-20 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10024809 [exp] 80 / 5e-18 AT5G42830 442 / 8e-153 HXXXD-type acyl-transferase family protein (.1) Lus10027778 [exp] 66 / 4e-15 AT5G01210 141 / 6e-42 HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 67 / 2e-13 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G147300 [exp] 229 / 2e-74 AT5G23940 578 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Potri.012G144500 [exp] 218 / 1e-69 AT5G23940 590 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 107 / 4e-28 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 100 / 2e-25 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 98 / 2e-24 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.010G192400 [exp] 93 / 7e-23 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 80 / 4e-18 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 77 / 4e-17 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 77 / 6e-17 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 76 / 1e-16 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10039255 pacid=23175545 polypeptide=Lus10039255 locus=Lus10039255.g ID=Lus10039255.BGIv1.0 annot-version=v1.0 ATGGCGGACAGCTACTTCGGAAACCTGATCCAGGCGATATTCACCGTCCTACCGGCCGGAATGCTCATCAGCAACCCGCCGGGGTTCGGGGCGTCGATGA TACAGGGGGTGATCGAGAAGCACGACGCGAAGGCGATCGAAGGGAGGAACGCGGAGTGGGAGGCGGCGCCGAAGATATTCCAGTTCAAGGACGCCGGAGT GAACTGCGTGGCGGTGGGGAGCTCGCCGAGGTTCAAGGTCTACGACGTGGATTTCGGATTCGGGAAGCCCGAGAGTGTCCGGAGCGGGTTGAATAACCGG TTCGACGGGATGGTGTATTTGTACCAAGGGAAGAACGGAGGGATCGATGTGGAGATTAGCTTGGAGAGTGCGGCGATGGAGAAGCTGGAGAAGGATAAGG AGTTTCTTATGGAGGGAGTTGACTGTAGTTTGGCCGCTTGA
AA sequence Show only first row Show all	>Lus10039255 pacid=23175545 polypeptide=Lus10039255 locus=Lus10039255.g ID=Lus10039255.BGIv1.0 annot-version=v1.0 MADSYFGNLIQAIFTVLPAGMLISNPPGFGASMIQGVIEKHDAKAIEGRNAEWEAAPKIFQFKDAGVNCVAVGSSPRFKVYDVDFGFGKPESVRSGLNNR FDGMVYLYQGKNGGIDVEISLESAAMEKLEKDKEFLMEGVDCSLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039255 [exp]	0	1
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	2.0	0.9309
AT5G37550			unknown protein		Lus10020807 [exp]	2.4	0.9220
AT4G27290			S-locus lectin protein kinase ...		Lus10006772 [exp]	3.9	0.9045
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039256 [exp]	4.5	0.9036
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10013395 [exp]	4.9	0.8912
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Lus10024101 [exp]	7.1	0.8740
AT5G12470			Protein of unknown function (D...		Lus10016379 [exp]	7.7	0.8664
AT5G62470	MYB	ATMYB96, mybcov...	myb domain protein 96 (.1.2)		Lus10002056 [exp]	10.2	0.8914
AT2G20920			Protein of unknown function (D...		Lus10027826 [exp]	10.2	0.8788
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10018268 [exp]	11.6	0.8897

Compare expression of checked genes

Lus10039255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.