Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23940 561 / 0 PEL3, DCR, EMB3009 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) AT5G01210 210 / 3e-62 HXXXD-type acyl-transferase family protein (.1) AT2G39980 206 / 8e-61 HXXXD-type acyl-transferase family protein (.1) AT5G42830 202 / 2e-59 HXXXD-type acyl-transferase family protein (.1) AT5G07850 193 / 5e-56 HXXXD-type acyl-transferase family protein (.1) AT5G07860 184 / 8e-53 HXXXD-type acyl-transferase family protein (.1) AT5G07870 180 / 3e-51 HXXXD-type acyl-transferase family protein (.1) AT3G50280 179 / 6e-51 HXXXD-type acyl-transferase family protein (.1) AT3G50270 174 / 3e-49 HXXXD-type acyl-transferase family protein (.1) AT3G50300 172 / 3e-48 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027500 [exp] 828 / 0 AT5G23940 571 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10039255 [exp] 293 / 8e-99 AT5G23940 206 / 3e-65 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Lus10035519 [exp] 192 / 3e-56 AT5G01210 520 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10040222 [exp] 188 / 6e-54 AT2G39980 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10028267 [exp] 186 / 4e-53 AT2G39980 631 / 0.0 HXXXD-type acyl-transferase family protein (.1) Lus10031148 [exp] 159 / 3e-43 AT5G67150 284 / 5e-91 HXXXD-type acyl-transferase family protein (.1) Lus10041591 [exp] 151 / 3e-40 AT5G67150 347 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10031149 [exp] 147 / 6e-39 AT3G50280 305 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Lus10021394 [exp] 142 / 3e-37 AT2G19070 466 / 4e-162 spermidine hydroxycinnamoyl transferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G147300 [exp] 598 / 0 AT5G23940 578 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Potri.012G144500 [exp] 583 / 0 AT5G23940 590 / 0.0 PERMEABLE LEAVES3, EMBRYO DEFECTIVE 3009, DEFECTIVE IN CUTICULAR RIDGES, HXXXD-type acyl-transferase family protein (.1) Potri.016G112400 [exp] 220 / 3e-66 AT5G01210 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.006G097500 [exp] 214 / 8e-64 AT5G01210 633 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025550 [exp] 192 / 1e-55 AT5G42830 579 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.014G025500 [exp] 191 / 2e-55 AT5G42830 576 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.003G057100 [exp] 191 / 3e-55 AT3G50280 303 / 4e-99 HXXXD-type acyl-transferase family protein (.1) Potri.003G057200 [exp] 190 / 3e-55 AT5G67150 297 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Potri.008G065000 [exp] 191 / 5e-55 AT2G39980 705 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.010G192400 [exp] 187 / 2e-53 AT2G39980 708 / 0.0 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10039256 pacid=23175547 polypeptide=Lus10039256 locus=Lus10039256.g ID=Lus10039256.BGIv1.0 annot-version=v1.0 ATGGCCTTCGGAGCCGCCGACCAAACAACCGCCGTCAAAATCACTTCCAAGACCCACGTCAAACCCACCACCACCAAGATCATCGGGAGGAAAGAATGCC AGCTCGTCACTTTCGACCTCCCTTACCTGGCGTTCTACTACAACCAGAAGCTCCTCATCTACAAATCCGACGGCTCTGACCAGCCGTTTGACTTCGCTGA CGCGGCGGGGAAGATCAGGGAGTCGCTGGGTGTGATCCTGGAGGAGTTCTACCAGCTGGCGGGAAAGCTTGGGAAAGACGAGGAGGGTGTTTTCAGAGTG GAGTATGATGACTCGGATGCTGACGTGGAGGGGGTTGAAGTGATGGAGGGTGTCGCCGAGGGTGTCTGCGTGGCGGATCTGACGGTGGAGGATGGATCTG GTGGGGCTTTGATTAAGGAGCTGATTCCTTATAATGGCGTGCTTAATCTTGACGGCATGCATCGTCCTTTGCTGGCTGTTCAGCTGACTAAGCTGAAAGA TGGACTCGCAATGGGCTGCGCGTTCAACCACGCGATTCTGGACGGGACTGCCACGTGGCACTTTATGAGCTCATGGGCCGAGATCTGCAGTGGCAAGTCC ACCTCCGTATCGAACCCGCCTTTCCTCGAGCGAACCAAGGCCCGTAACACGCGGGTGAAGCTCGACCTCTCTCCCCCGGCTCCGGCGGCCAAATCCGAAG AAGAAACCGCCGTCGCCGCCAAGCCGGAGGGTCAACAATTGAGAGAGAAGGTGTTTAAATTCTCCGACTCCGAAGTCGCCACGATCAAGTCACTGGTCAA TTCCAATCCGCCGTTGGCGGAGGGCAGTAAGCCTTTGTCCACTTTCCAGACCTTGTCCGTGCACATCTGGCGCCACGTCACCATGGCCAGGGAGCTCAAG CCCGAGGACTACACGGTGTTCACCGTCTTCGCCGACTGCAGGAAGCGGGTCGACCCGGCGATGCCGGACAGCTACTTCGGGAACCTGATCCAGGCGATAT TCACCGTCCTACCAGCCGGAATGCTCATCAGCAACCCGCCGGGGTTCGGGGCGTCGATGATACAGGGGGTGATCGAGAAGCACGACGCGAAGGCGATCGA AGGGAGGAACGCGGAGTGGGAGGCGGCGCCGAAGATATTCCAGTTCAAGGACGCCGGAGTGAACTGCGTGGCGGTGGGGAGCTCGCCGAGGTTGTACGTG GCGGTAGGGAGCTCGCCGAGGTTCAAGGTCTACGACGTGGATTTCGGGTTCGGGAAGCCCGAGAGTGTCCGGAGCGGGTTGAATAACCGGTTCGACGGGA TGGTGTATTTGTACCAAGGGAAGAACGGAGGGATCGATGTGGAGATTAGCTTGGAGAGTGCGGCGATGGAGAAGCTGGAGAAGGATAAGGAGTTTCTTAT GGAGGGAGTTGACTGTAGTTTGGCCGCTTGA
AA sequence Show only first row Show all	>Lus10039256 pacid=23175547 polypeptide=Lus10039256 locus=Lus10039256.g ID=Lus10039256.BGIv1.0 annot-version=v1.0 MAFGAADQTTAVKITSKTHVKPTTTKIIGRKECQLVTFDLPYLAFYYNQKLLIYKSDGSDQPFDFADAAGKIRESLGVILEEFYQLAGKLGKDEEGVFRV EYDDSDADVEGVEVMEGVAEGVCVADLTVEDGSGGALIKELIPYNGVLNLDGMHRPLLAVQLTKLKDGLAMGCAFNHAILDGTATWHFMSSWAEICSGKS TSVSNPPFLERTKARNTRVKLDLSPPAPAAKSEEETAVAAKPEGQQLREKVFKFSDSEVATIKSLVNSNPPLAEGSKPLSTFQTLSVHIWRHVTMARELK PEDYTVFTVFADCRKRVDPAMPDSYFGNLIQAIFTVLPAGMLISNPPGFGASMIQGVIEKHDAKAIEGRNAEWEAAPKIFQFKDAGVNCVAVGSSPRLYV AVGSSPRFKVYDVDFGFGKPESVRSGLNNRFDGMVYLYQGKNGGIDVEISLESAAMEKLEKDKEFLMEGVDCSLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039256 [exp]	0	1
AT3G61430		ATPIP1, PIP1;1,...	PLASMA MEMBRANE INTRINSIC PROT...		Lus10042385 [exp]	1.0	0.9762
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	3.7	0.9159
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039255 [exp]	4.5	0.9036
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10021061 [exp]	4.6	0.8949
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10018350 [exp]	4.9	0.9078
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10018268 [exp]	6.0	0.9042
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030840 [exp]	6.3	0.8889
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10011732 [exp]	6.9	0.8853
AT5G25840			Protein of unknown function (D...		Lus10037569 [exp]	7.5	0.8819
AT3G16370			GDSL-like Lipase/Acylhydrolase...		Lus10006856 [exp]	8.1	0.8973

Compare expression of checked genes

Lus10039256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.