Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49070 146 / 5e-42 Protein of unknown function (DUF677) (.1) AT1G20180 84 / 3e-19 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) AT3G19330 66 / 1e-12 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) AT3G19250 61 / 3e-11 Protein of unknown function (DUF677) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005612 [exp] 84 / 4e-19 AT1G20180 268 / 1e-86 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10010144 [exp] 84 / 6e-19 AT1G20180 260 / 4e-83 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10017348 [exp] 83 / 1e-18 AT1G20180 255 / 4e-81 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10035125 [exp] 75 / 9e-17 AT3G19330 183 / 1e-56 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10031977 [exp] 77 / 1e-16 AT3G19330 284 / 2e-93 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Lus10017286 [exp] 69 / 1e-13 AT1G20180 265 / 1e-85 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Lus10028573 [exp] 63 / 4e-12 AT3G49070 102 / 4e-25 Protein of unknown function (DUF677) (.1) Lus10018879 [exp] 48 / 2e-07 AT3G49070 56 / 2e-10 Protein of unknown function (DUF677) (.1) Lus10027501 [exp] 47 / 2e-06 AT3G49070 98 / 2e-23 Protein of unknown function (DUF677) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G147400 [exp] 174 / 4e-53 AT3G49070 253 / 1e-80 Protein of unknown function (DUF677) (.1) Potri.002G067300 [exp] 109 / 1e-28 AT1G20180 130 / 2e-34 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.005G193000 [exp] 107 / 7e-28 AT1G20180 155 / 8e-44 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.005G243800 [exp] 75 / 6e-16 AT1G20180 252 / 2e-80 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2) Potri.010G240200 [exp] 72 / 9e-15 AT3G19330 311 / 9e-104 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2), Protein of unknown function (DUF677) (.3) Potri.002G018200 [exp] 71 / 1e-14 AT1G20180 288 / 2e-94 Protein of unknown function (DUF677) (.1), Protein of unknown function (DUF677) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05055 [flax] [poplar] DUF677 Protein of unknown function (DUF677)
Representative CDS sequence Show only first row Show all	>Lus10039258 pacid=23175536 polypeptide=Lus10039258 locus=Lus10039258.g ID=Lus10039258.BGIv1.0 annot-version=v1.0 ATGGTTCGATCCGCTCAAATAAATTGCACAAAACTACTCAAACCGCTCGAGTCGATACGTGACAAGGCTCACGCCAATGTACGACTGAGAGCTAGGTTGA AGCACGGCTCGGCCATGTTTCTCGTGGCTCTAACCGCTTCGTTGACCGTCATACTAGCTACGCACGCACTCGCCTTACTCATCGCAGCTCCTACCATGGT TGTAGCTTCGATCGAGCTGGTCTCCACCAAAAAGCTAAACAAGGTAGTAAGTGAGCTAGACGTGGCAGCTAAAGGGATGTACATATTGAGTCGTGATTTG GAGACGATTAACGGGCTCGTGGCTCGACTGAGCGACGAGTTAGAGCACATGTGTGGAGCCGTGAAGTTTTGGCTCGATCGGGGCGAGACGTGGGTCCGGG CAGCAAATGGAGAAGTGTGGAAGGAGCTGAGAAAGAATGAGCGCGGCTTTAGCCAACATCTTGATGAGCTGGAGGAGCATTTGTATCTGTGTTTTATGAC CATTAATCGGGCTAGAAATCTTGTTGTGAAAGAGATTTTGGATCCGGGTCGAGCCATGAGACCGGATCCAAATATCTTATCAAAATAG
AA sequence Show only first row Show all	>Lus10039258 pacid=23175536 polypeptide=Lus10039258 locus=Lus10039258.g ID=Lus10039258.BGIv1.0 annot-version=v1.0 MVRSAQINCTKLLKPLESIRDKAHANVRLRARLKHGSAMFLVALTASLTVILATHALALLIAAPTMVVASIELVSTKKLNKVVSELDVAAKGMYILSRDL ETINGLVARLSDELEHMCGAVKFWLDRGETWVRAANGEVWKELRKNERGFSQHLDELEEHLYLCFMTINRARNLVVKEILDPGRAMRPDPNILSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49070			Protein of unknown function (D...		Lus10039258 [exp]	0	1
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10014184 [exp]	1.7	0.9850
AT3G45010		SCPL48	serine carboxypeptidase-like 4...		Lus10041338 [exp]	3.5	0.9822
AT1G70500			Pectin lyase-like superfamily ...		Lus10030888 [exp]	4.5	0.9779
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037381 [exp]	5.7	0.9818
AT1G23460			Pectin lyase-like superfamily ...		Lus10030602 [exp]	6.5	0.9759
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10013932 [exp]	7.1	0.9704
AT5G03260		LAC11	laccase 11 (.1)		Lus10002227 [exp]	7.7	0.9764
AT1G55180		PLDALPHA4, PLDE...	phospholipase D alpha 4 (.1)		Lus10036361 [exp]	8.4	0.9772
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10015737 [exp]	8.8	0.9653
					Lus10007415 [exp]	8.9	0.9735

Compare expression of checked genes

Lus10039258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.