Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23950 150 / 2e-44 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G07310 104 / 7e-26 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G01200 54 / 2e-08 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G13350 51 / 3e-07 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G33320 44 / 9e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G04360 42 / 0.0003 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027502 [exp] 320 / 5e-110 AT5G23950 164 / 8e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10005867 [exp] 109 / 1e-27 AT1G07310 206 / 3e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10040692 [exp] 108 / 2e-27 AT1G07310 189 / 2e-57 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10018213 [exp] 67 / 7e-13 AT1G07310 94 / 1e-22 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10003570 [exp] 57 / 6e-09 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10014466 [exp] 55 / 2e-08 AT1G04540 245 / 7e-76 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 55 / 3e-08 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008731 [exp] 41 / 0.0006 AT4G01200 222 / 3e-72 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10030501 [exp] 41 / 0.0006 AT2G40815 168 / 4e-49 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144600 [exp] 183 / 1e-56 AT5G23950 166 / 2e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G064900 [exp] 108 / 1e-27 AT1G07310 150 / 1e-42 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G249300 [exp] 101 / 6e-25 AT1G07310 224 / 1e-71 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.009G043300 [exp] 101 / 8e-25 AT1G07310 205 / 9e-64 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G065300 [exp] 56 / 1e-08 AT2G13350 261 / 6e-83 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G024200 [exp] 54 / 3e-08 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G172300 [exp] 53 / 7e-08 AT2G33320 265 / 8e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.019G021300 [exp] 53 / 1e-07 AT3G04360 213 / 2e-65 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G048400 [exp] 52 / 2e-07 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G166400 [exp] 49 / 9e-07 AT4G01200 211 / 4e-68 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10039259 pacid=23175496 polypeptide=Lus10039259 locus=Lus10039259.g ID=Lus10039259.BGIv1.0 annot-version=v1.0 ATGGGTTCCCGTTACGAAGTGGAAGTGGTGATCTCGTCCGCCAAGGACTTAAAAAACATCAACTGGGAGTACGGCACCCTCCGCCCGTACGCCGTCGTAT GGGTCGACCAGGACAAGAAATCCTCCACCCGAGTCGACGAGGAAGGCGACAACTTCCCCGTCTGGGACCAGAACTTAACCATCCCTCTCCCGCCGTCGGG ATCCCTCGAGTCCCACGTCCTCCACGTGGACATCGTCCACGCCGCCCGTCCCGACGAGGACACTAAGCCTCTCATTGGATCCGCTAAGCTCCCTCTCCGC GACGTCCTCGACGACGTCGGATTGAGCGGCGAGCGTTTCAAGAAATCCCTCACCCTCAAGCGCCCCTCCGGTAGGCCCCACGGGAAAGTGGAGGTAAAAG TTAGCGTTAGGGACATCAGGTATCATGCGCCTGATGCTTACTACGCGCCTCCCTACGGTGTGCCACCTCCCGCCTCATCCGGGTCACGTGATCACTACGC CACTGGGCCTCCTCCTTCGGGTTATGGGTCCCCGTATGGATCCGCGCCTTATGGATACGGGGCTCCGCCTCCAGTTCAGCAGCCGTATGGATATTCTGAC CCTGCTCCATACGGTGGGGGATATAACAATGCTCCGCCGCAGCAAGGGTACGGGGGGGCGGCGGGTTACACCGGTGGTGAGGAGAAGAAGAAGAGTACGT TTGGAGGGATGGGGACGGGATTGGCTGTGGGTGCGGTGGCGGGGGTTCTGGGTGGAATCGCGTTGGTGGAAGGGTTTGATGCGTTGGAGGATAAGATAGC TGATGATGCGGCGGAGAAGGTGGAGGAGGATTTGGGATATGACGACGACGACGAATAG
AA sequence Show only first row Show all	>Lus10039259 pacid=23175496 polypeptide=Lus10039259 locus=Lus10039259.g ID=Lus10039259.BGIv1.0 annot-version=v1.0 MGSRYEVEVVISSAKDLKNINWEYGTLRPYAVVWVDQDKKSSTRVDEEGDNFPVWDQNLTIPLPPSGSLESHVLHVDIVHAARPDEDTKPLIGSAKLPLR DVLDDVGLSGERFKKSLTLKRPSGRPHGKVEVKVSVRDIRYHAPDAYYAPPYGVPPPASSGSRDHYATGPPPSGYGSPYGSAPYGYGAPPPVQQPYGYSD PAPYGGGYNNAPPQQGYGGAAGYTGGEEKKKSTFGGMGTGLAVGAVAGVLGGIALVEGFDALEDKIADDAAEKVEEDLGYDDDDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23950			Calcium-dependent lipid-bindin...		Lus10039259 [exp]	0	1
AT1G51340			MATE efflux family protein (.1...		Lus10042365 [exp]	2.0	0.9363
AT5G18840			Major facilitator superfamily ...		Lus10012780 [exp]	3.7	0.9090
AT1G13480			Protein of unknown function (D...		Lus10031913 [exp]	4.2	0.9157
AT1G47530			MATE efflux family protein (.1...		Lus10002367 [exp]	6.9	0.9001
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003449 [exp]	8.4	0.9036
AT4G35160			O-methyltransferase family pro...		Lus10013945 [exp]	9.4	0.9144
AT1G47530			MATE efflux family protein (.1...		Lus10002365 [exp]	9.9	0.9014
AT1G51340			MATE efflux family protein (.1...		Lus10026303 [exp]	11.4	0.9144
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10007777 [exp]	11.5	0.8975
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10031069 [exp]	12.4	0.9168

Compare expression of checked genes

Lus10039259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.