Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52490 235 / 3e-77 Fibrillarin family protein (.1) AT5G52470 206 / 2e-65 ATFIB1, ATFBR1, SKIP7, FIB1 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2) AT4G25630 205 / 6e-65 ATFIB2, FIB2 fibrillarin 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027503 [exp] 374 / 4e-132 AT5G52470 313 / 2e-107 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2) Lus10014969 [exp] 362 / 8e-128 AT5G52470 310 / 5e-106 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2) Lus10038851 [exp] 271 / 2e-92 AT5G52470 221 / 9e-72 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144800 [exp] 213 / 2e-68 AT4G25630 463 / 1e-165 fibrillarin 2 (.1) Potri.015G147500 [exp] 211 / 1e-67 AT5G52470 462 / 1e-165 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2) Potri.008G192700 [exp] 150 / 4e-44 AT5G52470 378 / 2e-132 SKP1/ASK1-INTERACTING PROTEIN, fibrillarin 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01269 [flax] [poplar] Fibrillarin Fibrillarin
Representative CDS sequence Show only first row Show all	>Lus10039260 pacid=23175635 polypeptide=Lus10039260 locus=Lus10039260.g ID=Lus10039260.BGIv1.0 annot-version=v1.0 ATGGCACCACCAAGAGGAGGAAGGTCAGGAGGTTTCAGAGGAGGTAGGGGAGGCGATGGAGGCCGAGGAAGGGGCAGGGGAGGAGGTAGATTCGGAGGAA GCGGCGGCGGTGGGAGATTTGGCGACAGGGGAAGTGGCATGAAGCCTCGTGGTGGAGGACGTAGCGGAGGAAGAGGAGGAGGCCGTGGTGGCGGTCGCGG TGGAGGCGGAATGAGAGGCGGGAGCAAAGTTATAGTGGAGCCTCATAGACATGAAGGTGTTTTCATTGCTAAGGGCAAAGAAGACGCACTCGTTACCAAG AACCTTGTCCCTGGAGAGGCAGTGTACAATGAGAAGAGGATCTCTGTCCAGAATGAGGATGGAACAAAGGTTGAGTACAGGGTATGGAATCCCTTCAGAT CGAAGTTGGCAGCTGCTATTCTTGGTGGTGTTGACAACATCTGGATTAAACCTGGTGCTAAGGTTCTATACCTTGGAGCAGCATCTGGAACTACTGTCTC TCATGTATCTGACCTTGTTGGACCTGCTAGGATTCTAGCACTGAATGCTTCATACTTCTTGAAGTCTGGTGGCCACTTCGTTATCTCAATCAAGGCAAAC TGCATTGACTCAACAGTGCCAGCCGAGGCTGTGTTTGAGAGTGAGGTGAAGAAGATGACCCAGGAGCAGTTCAAGCCTGCCGAGCAGGTGACATTGGAGC CGTTTGAGAGAGACCATGCTTGTGTTATCGGCGGGTACCGTATGCCCAAGAAGAACAAAGCTTGA
AA sequence Show only first row Show all	>Lus10039260 pacid=23175635 polypeptide=Lus10039260 locus=Lus10039260.g ID=Lus10039260.BGIv1.0 annot-version=v1.0 MAPPRGGRSGGFRGGRGGDGGRGRGRGGGRFGGSGGGGRFGDRGSGMKPRGGGRSGGRGGGRGGGRGGGGMRGGSKVIVEPHRHEGVFIAKGKEDALVTK NLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPARILALNASYFLKSGGHFVISIKAN CIDSTVPAEAVFESEVKKMTQEQFKPAEQVTLEPFERDHACVIGGYRMPKKNKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10039260 [exp]	0	1
AT4G02930			GTP binding Elongation factor ...		Lus10027995 [exp]	1.0	0.9797
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10027503 [exp]	2.2	0.9661
AT3G66652			fip1 motif-containing protein ...		Lus10016905 [exp]	4.5	0.9623
AT1G74050			Ribosomal protein L6 family pr...		Lus10039084 [exp]	4.7	0.9720
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10035646 [exp]	5.3	0.9592
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10025686 [exp]	6.8	0.9511
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10042515 [exp]	6.9	0.9639
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10022832 [exp]	6.9	0.9615
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010763 [exp]	7.0	0.9646
AT1G74050			Ribosomal protein L6 family pr...		Lus10039083 [exp]	7.7	0.9671

Compare expression of checked genes

Lus10039260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.