Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25640 690 / 0 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT4G00350 675 / 0 MATE efflux family protein (.1) AT1G47530 502 / 2e-175 MATE efflux family protein (.1) AT3G26590 489 / 5e-170 MATE efflux family protein (.1) AT5G38030 484 / 3e-168 MATE efflux family protein (.1) AT1G12950 475 / 2e-164 RSH2 root hair specific 2 (.1) AT1G23300 473 / 7e-164 MATE efflux family protein (.1) AT5G65380 403 / 1e-136 MATE efflux family protein (.1) AT1G33110 399 / 3e-135 MATE efflux family protein (.1.2) AT1G61890 398 / 2e-134 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027504 [exp] 942 / 0 AT4G25640 683 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10038850 [exp] 823 / 0 AT4G25640 685 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10036374 [exp] 654 / 0 AT4G00350 749 / 0.0 MATE efflux family protein (.1) Lus10014760 [exp] 612 / 0 AT4G00350 703 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 496 / 7e-173 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 494 / 5e-172 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10036851 [exp] 490 / 2e-170 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 490 / 3e-170 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 488 / 5e-170 AT1G47530 704 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G144900 [exp] 654 / 0 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.015G147600 [exp] 651 / 0 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.002G161200 [exp] 600 / 0 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 502 / 4e-175 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 471 / 5e-163 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 436 / 2e-149 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.013G069700 [exp] 423 / 1e-144 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.011G002800 [exp] 419 / 2e-142 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 416 / 1e-141 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.014G153100 [exp] 410 / 3e-139 AT3G21690 704 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10039263 pacid=23175478 polypeptide=Lus10039263 locus=Lus10039263.g ID=Lus10039263.BGIv1.0 annot-version=v1.0 ATGGAGACACCACTCATCAACCACCACAATGACGAGGCCTCCGGTGGCGGCGACTATGCTCCAGTGAAGACCTTTAAGCAAGTGCGGTCTGTGTTCGGGA CGGAGACAGTGAAGCTGTGGAAGATTGCAGGCCCCATCGCGTTTAACACCTTGTGTCAGTACGGACTCAACTCCGTCACCAACATGTTCGTCGGCCACAT CGGCGAGTTCGAGCTCTCCGCCGTCGCCATTTCTCTCTCCGTCATCAGCACTTTCTCCTTCGGCTTCTTGTTGGGCATGGGGAGCGCGTTGGAGACACTA TGCGGGCAAGCATTCGGAGCAGGACAAGTCCACATGCTAGGAATCTACATGCAAAGATCATGGATAATCCTAACCCTATCATGTTTCGCCTTACTCCCGA TCTACATCTTCGCCACACCAATCCTTACCCTATTAGGACAACAAGAATCCATATCCAAATCAGCAGGCCACTTCACACTCCTCATAATCCCACAGCTCTT CTCCCTAGCGATCAACTTCCCGACCCAGAAGTTCCTCCAGGCTCAAAGCAAAGTCAACGCCTTAGCCTGGATCGCGCTGGGGGCACTGGCCGTGCAGATT CCCCTGCTCTGGCTGTTCATATTCAAGTTCGGTTGGGGCACGACCGGTGCTGCCTTGGCTTATGATGTCACCAGCTGGGGTGTTGCTCTGGCTCAGGTGG TTTATGTTGTCGGTTGGTGTAGTGAAGGGTGGAGTGGGTTAAGTTGGTTGGCTTTTAAGGATATTTGGGGGTTTGTGAAGCTGTCTTTTGCTTCTGCTGT TATGTTGTGTTTGGAGATTTGGTATATTATGAGTATCATTGTGCTTACTGGGCATCTCAATAATGCTGTCACTGCTGTTGGATCCCTTTCTATATGCATG AACTTCAATGGTTGGGAAGGGATGTTGTTCATTGGGATTAATGCAGCCATAAGTGTTCGAGTGTCGAACGAGCTAGGATCAGGACGCCCCAGAGGAGCGA AATACGCAGTCTACGCAATCGTATTCCAATCGTTCCTAATCGGGCTATTCTGCATGGTAGCAGTGCTGATAACAAAGGACTACTTCGCCATAATCTTCAC CAGCAGCCAAGACTTGCAGATAGCAGTCTCCAAGCTAGCTTTCCTGCTCGGAATCACCATGGTTCTCAACAGCGTCCAGCCTGTTATTTCGGGCGTGGCG GTCGGAGCAGGATGGCAAGGACTAGTGGCGTACATAAACATCTTCTGCTACTACGTGTTTGGTCTTCCTCTTGGGTTTCTGCTAGGATACAAGGCTAACT TGGGAGTCACGGGAATATGGGCAGGGATGATAGCAGGGACAGGGTTGCAGACTGTGCTGCTGTTGTTTATTCTGTATAAGACTAACTGGAACAAAGAGGT GGAGCAGAGTGCTGAGAGAATGAGGAAGTGGGGTGGCCAGGAAATTACCAATGGCCATGGGAAGCAACTCGCGTAG
AA sequence Show only first row Show all	>Lus10039263 pacid=23175478 polypeptide=Lus10039263 locus=Lus10039263.g ID=Lus10039263.BGIv1.0 annot-version=v1.0 METPLINHHNDEASGGGDYAPVKTFKQVRSVFGTETVKLWKIAGPIAFNTLCQYGLNSVTNMFVGHIGEFELSAVAISLSVISTFSFGFLLGMGSALETL CGQAFGAGQVHMLGIYMQRSWIILTLSCFALLPIYIFATPILTLLGQQESISKSAGHFTLLIIPQLFSLAINFPTQKFLQAQSKVNALAWIALGALAVQI PLLWLFIFKFGWGTTGAALAYDVTSWGVALAQVVYVVGWCSEGWSGLSWLAFKDIWGFVKLSFASAVMLCLEIWYIMSIIVLTGHLNNAVTAVGSLSICM NFNGWEGMLFIGINAAISVRVSNELGSGRPRGAKYAVYAIVFQSFLIGLFCMVAVLITKDYFAIIFTSSQDLQIAVSKLAFLLGITMVLNSVQPVISGVA VGAGWQGLVAYINIFCYYVFGLPLGFLLGYKANLGVTGIWAGMIAGTGLQTVLLLFILYKTNWNKEVEQSAERMRKWGGQEITNGHGKQLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Lus10039263 [exp]	0	1
AT3G49220			Plant invertase/pectin methyle...		Lus10022412 [exp]	3.2	0.8794
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	3.5	0.9043
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10002015 [exp]	6.0	0.8940
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10007651 [exp]	7.7	0.8372
AT1G55790			Domain of unknown function (DU...		Lus10016345 [exp]	7.8	0.7960
AT4G29680			Alkaline-phosphatase-like fami...		Lus10007981 [exp]	7.9	0.8984
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031283 [exp]	9.9	0.8803
AT5G52790			CBS domain-containing protein ...		Lus10036040 [exp]	11.5	0.8318
AT3G03430			Calcium-binding EF-hand family...		Lus10033587 [exp]	12.0	0.8876
AT5G20860			Plant invertase/pectin methyle...		Lus10033621 [exp]	12.3	0.8890

Compare expression of checked genes

Lus10039263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.