Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52520 868 / 0 PRORS1, OVA6 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1) AT3G62120 378 / 2e-125 Class II aaRS and biotin synthetases superfamily protein (.1.2) AT5G10880 126 / 3e-32 tRNA synthetase-related / tRNA ligase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027506 [exp] 981 / 0 AT5G52520 915 / 0.0 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1) Lus10016281 [exp] 360 / 1e-118 AT3G62120 876 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G142500 [exp] 900 / 0 AT5G52520 878 / 0.0 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1) Potri.002G187000 [exp] 394 / 4e-132 AT3G62120 827 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1.2) Potri.014G112400 [exp] 392 / 2e-131 AT3G62120 812 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1.2) Potri.004G078932 [exp] 226 / 1e-70 AT5G52520 204 / 1e-62 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1) Potri.004G078866 [exp] 206 / 3e-64 AT5G52520 215 / 3e-68 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF03129 [flax] [poplar] HGTP_anticodon Anticodon binding domain CL0040 [flax] [poplar] tRNA_synt_II PF00587 [flax] [poplar] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) CL0040 [flax] [poplar] PF09180 [flax] [poplar] ProRS-C_1 Prolyl-tRNA synthetase, C-terminal
Representative CDS sequence Show only first row Show all	>Lus10039267 pacid=23175562 polypeptide=Lus10039267 locus=Lus10039267.g ID=Lus10039267.BGIv1.0 annot-version=v1.0 ATGGTAGCGTCTCTCCGGCTACCGTCGCTGACCTCACTCTTCTTCTCTTCCACCTCCTCTCAGTCTTCTCTCCGAGCTCCGGCGATCTTCCGCCGCCGCC ACGAGTTCCGGCGGCAGCCTCTGATTGCCGCACGGTTTTCAGCCGAGAGTGCTGGTGCGTCCACCAGTCAACCTAGCAAGACAGAAAACCAGAAGAACAA GGTCAATCAAGACCGCGTCATCACTCCTCGTTCACAGGACTTCAATGCTTGGTACCTGGATGTGCTTTCTAATGCTGAGTTGTCCGATTATGGTCCTGTT CGTGGAACTATGGTCATTCGTCCTTACGGTTACGCTATCTGGGAGGCAATTCAGGATTATTTGAATGTCAAATTCAAGGAGACTGGGCATAGCAACATGT ATTTCCCACAGTTTATACCGTATTCCTTTATAGAGAAAGAAGCTAGTCATGTGGAGGGGTTCAGTCCTGAACTTGCTGTTGTAACTATTGGTGGAGGAAA GGAGCTCGAAGAAAAACTTGTGGTGAGACCTACCAGCGAAACCATAGTGAATCACATGTTCACTCAGTGGATTCATAGCTACCGCGACCTGCCTCTGTTG ATCAATCAGTGGGCAAATGTCACTAGATGGGAAATGCGTACAAAACCGTTTGTGAGGACTCTTGAGTTTTTGTGGCAGGAGGGGCATACTGCCCATGCCA CTGCAGAGGAGGCAGAAAAAGAGGCAATGCAAATGATTGATGTCTATACAAAATTCGCTTATGAGGAGGCTGCAATACCAGTGATTGTAGGTAGGAAGTC CAGGGAAGAAACGTTTGCTGGAGCTGTTAGAACATATACTATAGAGGCTATGATGGGTGATCGAAAGGCATTGCAGGCTGGAACCAGCCATAACCTTGGG CAGAATTTTTCCCGGGCTTTTGGAACACAGTTTGCTGATGAAAATGGTCAGAGGCAACATATATGGCAAACATCATGGGCCATCAGTACACGTTTTATTG GTGGCATTATCATGACTCATGGAGATGATGCCGGCCTAATGCTTCCTCCTAGGCTTGCACCAATTCAGGTAGTGATAGTGCCCATATGGAAGAAGGATGA TGAAAAAGCTGGGGTTTTGAATGCTGCCTCCTCAGTGAAAGAAGTTCTGCAGTGTGCCGGTGTGAAAGTAAAATTTGATGATACGGATACGAGAACACCT GGATGGAAGTTCAATTTCTGGGAAATGAAGGGAGTCCCTCTAAGAATTGAGATTGGTCCTCGGGATGTTTCAAGTGGAAGTGTAGTCATATCAAGGAGAG ACGTCCCTGGAAAGCAAGGCAAAGTTTTTGGAATATCCATGGAGCCTTCAACTTTAGTAAGTTACGTGAAAGACAAGCTGGATGAGGTCCAAGCATCTCT GCTGGAAAAGGCAACATCGTTTCGAGACAGTAACATTGTGGACGTGAGCTCGTATGATGAATTGAAAGAAGCAATAACGGCAGGAAAATGGGCAAGGGGT CCTTGGTCTGCTAGTGATGAAGATGAAGCAAGAGTGAAAGAAGAAACCGGAGCAACAATCCGGTGTTTCCCGTTCGACCAGCCAGAGGGAACCAAAACAT GCTTGATGACAGGCCAACCTGCTGAAGAAGTTGCGATTTTCGCCAAGTCCTACTAG
AA sequence Show only first row Show all	>Lus10039267 pacid=23175562 polypeptide=Lus10039267 locus=Lus10039267.g ID=Lus10039267.BGIv1.0 annot-version=v1.0 MVASLRLPSLTSLFFSSTSSQSSLRAPAIFRRRHEFRRQPLIAARFSAESAGASTSQPSKTENQKNKVNQDRVITPRSQDFNAWYLDVLSNAELSDYGPV RGTMVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELAVVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLL INQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATAEEAEKEAMQMIDVYTKFAYEEAAIPVIVGRKSREETFAGAVRTYTIEAMMGDRKALQAGTSHNLG QNFSRAFGTQFADENGQRQHIWQTSWAISTRFIGGIIMTHGDDAGLMLPPRLAPIQVVIVPIWKKDDEKAGVLNAASSVKEVLQCAGVKVKFDDTDTRTP GWKFNFWEMKGVPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSTLVSYVKDKLDEVQASLLEKATSFRDSNIVDVSSYDELKEAITAGKWARG PWSASDEDEARVKEETGATIRCFPFDQPEGTKTCLMTGQPAEEVAIFAKSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10039267 [exp]	0	1
AT1G80770		PDE318	pigment defective 318, P-loop ...		Lus10043354 [exp]	2.8	0.8819
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10015552 [exp]	5.5	0.9166
AT2G39670			Radical SAM superfamily protei...		Lus10002698 [exp]	8.5	0.8228
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Lus10034171 [exp]	9.0	0.8776
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031736 [exp]	11.2	0.8846
AT3G47450		RIF1, ATNOA1, A...	RESISTANT TO INHIBITION WITH F...		Lus10031160 [exp]	12.0	0.8929
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10027371 [exp]	15.3	0.8927
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10028505 [exp]	15.7	0.8921
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Lus10027506 [exp]	20.3	0.8250
AT5G15700			DNA/RNA polymerases superfamil...		Lus10035150 [exp]	22.6	0.8919

Compare expression of checked genes

Lus10039267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.