Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01580 621 / 0 FRD1, ATFRO2, FRO2 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) AT1G01590 598 / 0 ATFRO1, FRO1 ferric reduction oxidase 1 (.1) AT5G23980 585 / 0 FRO2, ATFRO4, FRO4 ferric reduction oxidase 4 (.1) AT1G23020 564 / 0 ATFRO3, FRO3 ferric reduction oxidase 3 (.1.2) AT5G23990 475 / 3e-159 ATFRO5, FRO5 ferric reduction oxidase 5 (.1) AT5G50160 281 / 6e-84 ATFRO8, FRO8 ferric reduction oxidase 8 (.1) AT5G49730 261 / 1e-76 ATFRO6, FRO6 ferric reduction oxidase 6 (.1) AT5G49740 259 / 1e-75 ATFRO7, FRO7 ferric reduction oxidase 7 (.1) AT4G25090 89 / 3e-18 Riboflavin synthase-like superfamily protein (.1.2) AT1G64060 84 / 3e-16 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027507 [exp] 698 / 0 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10036379 [exp] 563 / 0 AT1G01580 691 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10036381 [exp] 526 / 8e-178 AT1G01580 701 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10014957 [exp] 468 / 3e-156 AT5G23980 665 / 0.0 ferric reduction oxidase 4 (.1) Lus10007586 [exp] 262 / 9e-77 AT5G49740 867 / 0.0 ferric reduction oxidase 7 (.1) Lus10019488 [exp] 257 / 4e-75 AT5G50160 691 / 0.0 ferric reduction oxidase 8 (.1) Lus10012161 [exp] 219 / 1e-62 AT5G49740 723 / 0.0 ferric reduction oxidase 7 (.1) Lus10043339 [exp] 92 / 6e-19 AT3G48190 321 / 5e-96 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10020644 [exp] 82 / 9e-16 AT1G09090 1085 / 0.0 respiratory burst oxidase homolog B (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G079100 [exp] 699 / 0 AT1G01580 692 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.017G142700 [exp] 692 / 0 AT1G01580 677 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.014G088000 [exp] 630 / 0 AT1G01580 762 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.017G142800 [exp] 624 / 0 AT5G23980 894 / 0.0 ferric reduction oxidase 4 (.1) Potri.004G079200 [exp] 607 / 0 AT5G23980 870 / 0.0 ferric reduction oxidase 4 (.1) Potri.015G083200 [exp] 281 / 3e-84 AT5G50160 650 / 0.0 ferric reduction oxidase 8 (.1) Potri.012G084800 [exp] 281 / 3e-84 AT5G50160 657 / 0.0 ferric reduction oxidase 8 (.1) Potri.001G079000 [exp] 259 / 6e-76 AT5G49730 886 / 0.0 ferric reduction oxidase 6 (.1) Potri.001G070900 [exp] 83 / 3e-16 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.012G111600 [exp] 79 / 9e-15 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10039268 pacid=23175475 polypeptide=Lus10039268 locus=Lus10039268.g ID=Lus10039268.BGIv1.0 annot-version=v1.0 ATGTCTACAGTAAGGAAAGAAAGCGCTTCAGTGAGAGCAATGATAGCAGCACGAGTATCCATAGGAATACTTCTCGTGTTCGTATTCATCGGTTACATCT TGGTCTGGCTAATGTCTTGTACCAACATCTTCTACCTTCGTTGGATGCCTCGCGTTCATGCCGAGACGAATTTCACCTTCATCGGAGCTCAAGGTCAAAA CACTCTGATCTATACACTTCCAATCATTTTCATTGCTGTCATGGCCTGCCTCTATCTCCACTTGGAGAAGAAACTTGTTCATCGCGCAATCAGCAAGAGA GACTTTAAATTTGCTAGGTGGAGAAAGCCAGTGCTGATAAAAGGAGCTCTAGGGATTGTGACAAGGACAGAGCTAGCCTTCTTGCTTATGTTCGTTGCTC TGTTGAGTTGGTCGGTCTACTCGTATCTGCATGCCATGTTTGGCCCGATTCGGCAGGAGGCAGCAGCTCAAGGACTGAAAGTATGGGAAGTCAAGCTGTC GAGTACCGGGCTTACTCTTGGACTTGTGGGGAACATCTGCCTAGCTTTCATCTTTTTCCCAGTCACCAGAGGATCTTCGGTTCTCCAAATGGTCGGCCTC ACTTCGGAGTCGAGCATCAAGTACCATATGTGGTTGGGACATATGGCGATGACCCTTTTCACGTTGCACGGTCTGTGTTACATCGTGTTCTGGGCCGAAA CAACTCAACTCCTCCAGCAAATGATGAAATGGGATGATCTATTGGTCGCGAACGTGGCAGGGGAGGTCGCGTTGGCTGCCGGATTGCTCATGTGGGCGAC GAGCTTTACTTGCATCAGAAGGAAGTTCTTCGAGCTCTTCTTCTACACACATCATCTCTACATTGTGTTTGTTATCTTCTACGTGTTCCACGTCGGCTTC TCTTCTGTCTGTACCATCCTTCCCGGCATCTACCTCTTTGCGATCGATCGCTTCCTGAGATTGCTTCAATCCCAGCAGAGGGTTCGCCTAGTTTCTGCTC GTGTCTTACCCTGTCAAGCTGTGGAGTTGAATTTCGCCAAGAGCTCACGACTGATGTACAATCCAACAAGCAGCATGTTCATAAACATCCCAAGCATTTC GAAACTGCAATGGCATCCATTCTCAGTAACATCAAGCAGCAAACTGGAAGCTGACAGGATAAGCGTCGTGATCAAAAGCGAAGGACATTGGACTACGAAA CTGTATCAGAAACTCTCATCTCCTCCACCAAGAAATCACTTTGAGGTCTCCGTTGAAGGTCCTTATGGGCCGGTTTCTTCTGAATTCATGAGGCATGATA CACTGGTATTGGTGAGCGGAGGGAGTGGGATAACCCCGTTCATCTCAATCATACGTGAAATCATCTGCTTATCAAAGACGAAGGGCGCCAAAATTCCCAA AGTGCTCTTGATATGTGCTTTCAAACGCTCTGTGGATCTCACAATCCTGGACCTTCTCCTTCCAGTTCCAGAGAGGAGCTCAACAGACCGAACCCTTGAC TTTTCCGTCACGGAGCTGCAGATCGAAGCGTTCGTCACCAGAGAAAAAGAGAGGAAACCAGAGGAGACGGAACAAAGCCAGACTCAAACCCTATGGTTCC GGTCAAACCAGATAGACATACCGGTTGACACAGCACTAGGACCGAACAGCTGGATCTGGTTAGGAGGGATCATTTCAGGATCATTCATGGTCTACCTGGT GCTGATGGGGCTTGTGACAGAATACTACATATACCCGATTGACGACAACACCAATCAAAGATTCTCAGCTCCAGCAAAGGCAGCACTGAATATCCTCTCA ATCTGTGTGGCAATTGTGGTAAGTTCAATGATAGGGTTTCTATGGAACATGAGAGCCAAGGACAGAGAGAATGTTAGAGTTGTGGACAGAGAGAGGCTAG CGCCGACCACAAATTTGGGCGAAGGAAATCGAGATGCAGAGATGGAGGTAGAGAGTCAGCCTGAGAATGCAATTCGCCAAGTGACGACAATCCATTTTGG GAAAAGGCCAAACATGAAGCGAATACTGCTGGATGTTGAAGGAGAGAATGTGGGAGTACTAGCAAGTGGTCCTAAGAAGCTGCGGCAGACAGTGGCGAAC TTCTGTTCGTCGTCAATGGCTGATAACCTACACTTCCATTCTATCAGCTTCACTTGGTAA
AA sequence Show only first row Show all	>Lus10039268 pacid=23175475 polypeptide=Lus10039268 locus=Lus10039268.g ID=Lus10039268.BGIv1.0 annot-version=v1.0 MSTVRKESASVRAMIAARVSIGILLVFVFIGYILVWLMSCTNIFYLRWMPRVHAETNFTFIGAQGQNTLIYTLPIIFIAVMACLYLHLEKKLVHRAISKR DFKFARWRKPVLIKGALGIVTRTELAFLLMFVALLSWSVYSYLHAMFGPIRQEAAAQGLKVWEVKLSSTGLTLGLVGNICLAFIFFPVTRGSSVLQMVGL TSESSIKYHMWLGHMAMTLFTLHGLCYIVFWAETTQLLQQMMKWDDLLVANVAGEVALAAGLLMWATSFTCIRRKFFELFFYTHHLYIVFVIFYVFHVGF SSVCTILPGIYLFAIDRFLRLLQSQQRVRLVSARVLPCQAVELNFAKSSRLMYNPTSSMFINIPSISKLQWHPFSVTSSSKLEADRISVVIKSEGHWTTK LYQKLSSPPPRNHFEVSVEGPYGPVSSEFMRHDTLVLVSGGSGITPFISIIREIICLSKTKGAKIPKVLLICAFKRSVDLTILDLLLPVPERSSTDRTLD FSVTELQIEAFVTREKERKPEETEQSQTQTLWFRSNQIDIPVDTALGPNSWIWLGGIISGSFMVYLVLMGLVTEYYIYPIDDNTNQRFSAPAKAALNILS ICVAIVVSSMIGFLWNMRAKDRENVRVVDRERLAPTTNLGEGNRDAEMEVESQPENAIRQVTTIHFGKRPNMKRILLDVEGENVGVLASGPKKLRQTVAN FCSSSMADNLHFHSISFTW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10039268 [exp]	0	1
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10040791 [exp]	2.0	0.9381
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10041197 [exp]	4.2	0.9243
AT2G39650			Protein of unknown function (D...		Lus10020938 [exp]	4.5	0.8690
AT2G23110			Late embryogenesis abundant pr...		Lus10029709 [exp]	4.9	0.9227
AT3G21690			MATE efflux family protein (.1...		Lus10020049 [exp]	5.1	0.8589
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10000705 [exp]	6.0	0.8966
					Lus10016958 [exp]	6.9	0.9052
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	8.7	0.9136
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10022246 [exp]	8.8	0.8785
AT2G23110			Late embryogenesis abundant pr...		Lus10042745 [exp]	8.9	0.9005

Compare expression of checked genes

Lus10039268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.