Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014888 [exp] 90 / 2e-23 ND 39 / 7e-04 Lus10004093 [exp] 86 / 8e-22 ND 39 / 6e-04 Lus10029497 [exp] 81 / 1e-19 ND / Lus10013815 [exp] 64 / 3e-13 ND / Lus10029656 [exp] 54 / 7e-10 ND / Lus10011629 [exp] 53 / 5e-09 ND 39 / 6e-04 Lus10019608 [exp] 46 / 7e-07 ND / Lus10023773 [exp] 0 / 1 ND / Lus10022142 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039269 pacid=23175636 polypeptide=Lus10039269 locus=Lus10039269.g ID=Lus10039269.BGIv1.0 annot-version=v1.0 ATGGACAAGCACCGAAACACCAAAGAGGGCATCAAGACGTGTATCGCACACAATAATGAATCCGGGGAAGAAATTCTTTGGTTGCCCTCGTTACTTGTCG CATGTAAGGCATACTGCTTTGGTTATTATACTGGCAGTGTTAGGCTGTATTCCCTCCTAAACATTAAATGTACTGATTCGAGGCAGGTTGACAAAGGGTG CGGGTACTTTGAATGGTACGATGTCAAGGTTGCTAGAATGAAAGAAAAAGAAGAGCTGGTTCGAATGATAGACAGATTGCAGGCTGAAGTGAAGCAACTT CGAATAGCAAATGTTCAGCTGCAAGAAGAAATCGGGAAAGTTAGTTGCTCAAATGAGGAAGAAGTGTGCTCATTGACCAATTTCAAGGGGAAGGAATGTC AAATGGCTAGGGAGTTACACTTGATTAAGTGTAGACTTAGTTTACTAGAGAAGAATGGTTGTTGTGAACATGGCAAAGGAAAGTGA
AA sequence Show only first row Show all	>Lus10039269 pacid=23175636 polypeptide=Lus10039269 locus=Lus10039269.g ID=Lus10039269.BGIv1.0 annot-version=v1.0 MDKHRNTKEGIKTCIAHNNESGEEILWLPSLLVACKAYCFGYYTGSVRLYSLLNIKCTDSRQVDKGCGYFEWYDVKVARMKEKEELVRMIDRLQAEVKQL RIANVQLQEEIGKVSCSNEEEVCSLTNFKGKECQMARELHLIKCRLSLLEKNGCCEHGKGK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039269 [exp]	0	1
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10002062 [exp]	1.7	0.7705
AT4G35310		CPK5, ATCPK5	calmodulin-domain protein kina...		Lus10016191 [exp]	5.8	0.7434
					Lus10040033 [exp]	8.3	0.7371
AT2G21990			Protein of unknown function, D...		Lus10026148 [exp]	8.7	0.7146
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10018132 [exp]	10.0	0.7293
AT4G10260			pfkB-like carbohydrate kinase ...		Lus10040562 [exp]	11.8	0.6107
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10026807 [exp]	18.5	0.6445
					Lus10005843 [exp]	22.8	0.5996
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017040 [exp]	24.0	0.6025
					Lus10022511 [exp]	24.1	0.5996

Compare expression of checked genes

Lus10039269 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.