Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56820 81 / 8e-17 F-box/RNI-like/FBD-like domains-containing protein (.1) AT4G00160 67 / 5e-12 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G49030 63 / 7e-11 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT5G56810 63 / 7e-11 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G52670 62 / 1e-10 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT3G52680 62 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G53840 62 / 2e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G49020 60 / 1e-09 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT3G26922 59 / 2e-09 F-box/RNI-like superfamily protein (.1) AT5G03100 58 / 2e-09 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027507 [exp] 144 / 5e-38 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10029952 [exp] 136 / 2e-37 AT5G03100 68 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10029953 [exp] 131 / 2e-35 AT5G03100 66 / 3e-12 F-box/RNI-like superfamily protein (.1) Lus10037440 [exp] 126 / 6e-32 AT1G69630 84 / 5e-17 F-box/RNI-like superfamily protein (.1) Lus10018543 [exp] 106 / 4e-25 AT1G03510 534 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035308 [exp] 91 / 4e-21 AT5G22730 57 / 2e-09 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10027471 [exp] 82 / 2e-17 AT5G22730 55 / 2e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10037289 [exp] 82 / 7e-17 AT5G02920 61 / 4e-10 F-box/RNI-like superfamily protein (.1) Lus10035326 [exp] 78 / 1e-16 AT5G27750 66 / 1e-12 F-box/FBD-like domains containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002100 [exp] 67 / 4e-12 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.017G146400 [exp] 64 / 3e-11 AT3G28410 79 / 2e-15 F-box/RNI-like superfamily protein (.1) Potri.017G146300 [exp] 64 / 4e-11 AT5G02700 71 / 8e-13 F-box/RNI-like superfamily protein (.1) Potri.001G395000 [exp] 61 / 6e-10 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.014G039700 [exp] 59 / 1e-09 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.017G146500 [exp] 58 / 4e-09 AT5G02920 64 / 2e-11 F-box/RNI-like superfamily protein (.1) Potri.012G099400 [exp] 57 / 6e-09 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G104200 [exp] 56 / 9e-09 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 55 / 4e-08 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 53 / 2e-07 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039271 pacid=23175471 polypeptide=Lus10039271 locus=Lus10039271.g ID=Lus10039271.BGIv1.0 annot-version=v1.0 ATGGCGAAGAAGCGGAAATTTAAATCAGGCAAAGCAATTCCGGTTGCCGCCGCCGACGCCGCCCCGGCCAAGGATCGAATCTCAGAACTTCCAGAAGAAG TCCTCCACGACATCCTCTGGCGAATAGACTCCCCCAAACAAGCCGCAAAGTCCATTACCCTTTCCAGGCGATGGCGAAGCGTCTGGAGATCCTACCCTGT ACTGGAATTCGACGAGACCAAATGCCGCCGCCGCAACAGTCTTTGTAAAATTTACAGAAGCCTCGATCGAGGAGTTTTCTCGGTACAACCGATTGGCCAT TCGAAACCCTGGATATCACAATCCAGGGTTCTTGAGAAGCTTCTGGAGTTGGCGACGGAGAGGAAAGGCGAAAATGTCATGATCAAGGTCAGAGGAGGAT ACGTCTGCTTTCCCTGCTCACTACTCTCCAATTCCGGCGCCAAAACTCTCCAATTGTCAGGCATCAGCTTATTTAATTCCCGGTACCCTCTCGCTCTCAA TTCTCTGCGAACTCTTGTGATCTATGATGTAAAGTTCGGAAACGAACAAATTTTCACCGACTCGATAGCTAGCTGTCCCCTCCTTGAAACCATAGACATC GGATTTGTACATTTGAAGCTTTCCAATGTCCCCAACCTGAAGAATTTGGACATCGATTGTGATTGCTCAGCTAAGCAAATTGAGATTGATGCTCCTGCAC CCAAGAAGCTGAAGATTAACCACGCGTATCGGGTCACCAAGCTTGTACTCGTAGCCCCTCAACTTGAGCATTTACAGATCCGTGGAGTTCATTTGTCAGG CTCAAGACTTCAGGATGTAATCTCTAAGTTCCCATCTCTGAAGTCCCTAGCCCTGAGTGGATTCATGCGAGTTGGAAAGAATCTGAGCCTGAACCTTTCG ACTAGTCCGAATCTCCAGGAAGTCAAGATCTGGGCATCCCATCATGAATTGGACTACATTGTGCTTGATGCTGGGTCCTACTCTGTCGAGATTTTACCTC CTGGGCTATAA
AA sequence Show only first row Show all	>Lus10039271 pacid=23175471 polypeptide=Lus10039271 locus=Lus10039271.g ID=Lus10039271.BGIv1.0 annot-version=v1.0 MAKKRKFKSGKAIPVAAADAAPAKDRISELPEEVLHDILWRIDSPKQAAKSITLSRRWRSVWRSYPVLEFDETKCRRRNSLCKIYRSLDRGVFSVQPIGH SKPWISQSRVLEKLLELATERKGENVMIKVRGGYVCFPCSLLSNSGAKTLQLSGISLFNSRYPLALNSLRTLVIYDVKFGNEQIFTDSIASCPLLETIDI GFVHLKLSNVPNLKNLDIDCDCSAKQIEIDAPAPKKLKINHAYRVTKLVLVAPQLEHLQIRGVHLSGSRLQDVISKFPSLKSLALSGFMRVGKNLSLNLS TSPNLQEVKIWASHHELDYIVLDAGSYSVEILPPGL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56820			F-box/RNI-like/FBD-like domain...		Lus10039271 [exp]	0	1
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10006058 [exp]	7.0	0.6162
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Lus10036588 [exp]	12.4	0.5665
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10020721 [exp]	33.9	0.5336
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Lus10030902 [exp]	46.6	0.5013
AT3G58490		AtSPP1	sphingoid phosphate phosphatas...		Lus10000850 [exp]	47.6	0.5280
AT5G53870		AtENODL1	early nodulin-like protein 1 (...		Lus10009196 [exp]	50.8	0.5289
AT2G13980			Polynucleotidyl transferase, r...		Lus10011601 [exp]	61.7	0.5087
AT4G37340		CYP81D3	"cytochrome P450, family 81, s...		Lus10018712 [exp]	97.7	0.4979
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10029090 [exp]	98.0	0.4537
AT1G65980		TPX1	thioredoxin-dependent peroxida...		Lus10023180 [exp]	115.3	0.4814

Compare expression of checked genes

Lus10039271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.